Latest Research in Machine Learning

Top Research Topics in Machine Learning

• Machine Learning — 7 papers
• Genomics and Chromatin Dynamics — 7 papers
• Single-cell and spatial transcriptomics — 6 papers
• Gene Regulatory Network Analysis — 4 papers
• DNA Repair Mechanisms — 3 papers
• Advanced Electron Microscopy Techniques and Applications — 2 papers
• Bioinformatics and Genomic Networks — 1 papers
• RNA modifications and cancer — 1 papers
• Microtubule and mitosis dynamics — 1 papers
• Ubiquitin and proteasome pathways — 1 papers

Highest-Cited Papers

1. Cohesin acts as a transcriptional gatekeeper by restraining pause–release to promote processive elongation (4 citations)
2. On the use of variational autoencoders for biomedical data integration (1 citations)
3. Conformational asymmetry of replicated human chromosomes (3 citations)
4. scProtoTransformer: Scalable reference mapping across molecules, cells, and donors (1 citations)
5. When models choose metrics: Hidden geometry in computational biology
6. A Real‐Data‐Driven Framework for Evaluating Differential Transcript Usage Methods Across Long‐Read Bulk, Single‐Cell, and Spatial Transcriptomics
7. Dynamic Generalized Gromov-Wasserstein Optimal Transport
8. CellRFT: Reinforcement Fine-Tuning for Single-Cell Perturbation Modeling
9. N6-Methyladenosine RNA Modifications Influence the Stability of FUS-Dependent Biological Condensate Formation
10. Cohesin reshapes replication fork contacts to aid fork slowing and reversal
11. Regulation of TIPIN and replication fork dynamics by USP37
12. Three-dimensional chromatin architecture is rapidly restored after DNA replication
13. Structural principles underlying the evolution of SWI/SNF chromatin remodelers
14. Unique Molecular Identifiers Don’t Need to be Unique: A Collision-Aware Estimator for RNA-Seq Quantification
15. A Spectral Decomposition Framework for Multiscale Nonlinear Dimensionality Reduction
16. A Unified Framework of the Seonggil Field Equations and HJB Tensor PDEs for High-Dimensional Gene Regulatory Networks via scRNA-seq Integration
17. A Unified Framework of the Seonggil Field Equations and HJB Tensor PDEs for High-Dimensional Gene Regulatory Networks via scRNA-seq Integration
18. SimCP-NS: Similarity-based Copy Paste for Semi-Supervised 3D EM Neuron Segmentation
19. Towards a knowledge-enhanced single-cell foundation model
20. Bayesian inference of gene regulatory networks at stochastic steady state