A Unified Framework of the Seonggil Field Equations and HJB Tensor PDEs for High-Dimensional Gene Regulatory Networks via scRNA-seq Integration

This paper presents a unified geometric control framework for high-dimensional gene regulatory networks, bridging rigorous theoretical physics with practical Cellular Control Therapeutics. We integrate the Seonggil Field Equations with a stochastic Hamilton-Jacobi Bellman (HJB) tensor PDE on a Riemannian manifold. To directly apply this theoretical PDE to empirical single- cell RNA sequencing (scRNA-seq) datasets, we overcome the destructive measurement limitations of scRNA-seq by replacing point-to-point trajectory tracking with a distribution-matching paradigm. Utilizing a Deep Forward-Backward StochasticDifferential Equation (FBSDE) architecture combined with a Multi-scale Maximum Mean Discrepancy (MMD) Hybrid Loss, we enable the optimal transport and control of cellular populations towards healthy states. The complete theoretical derivation and its PyTorch pipeline are provided.

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-09-14
DOI
https://doi.org/10.5281/zenodo.22738129
Primary Topic
Gene Regulatory Network Analysis
Type
preprint
Controls
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preprint

A Unified Framework of the Seonggil Field Equations and HJB Tensor PDEs for High-Dimensional Gene Regulatory Networks via scRNA-seq Integration

Seonggil Lee
Zenodo (CERN European Organization for Nuclear Research)
Gene Regulatory Network Analysis
preprint

A Unified Framework of the Seonggil Field Equations and HJB Tensor PDEs for High-Dimensional Gene Regulatory Networks via scRNA-seq Integration

Seonggil Lee
preprint en

Abstract

This paper presents a unified geometric control framework for high-dimensional gene regulatory networks, bridging rigorous theoretical physics with practical Cellular Control Therapeutics. We integrate the Seonggil Field Equations with a stochastic Hamilton-Jacobi Bellman (HJB) tensor PDE on a Riemannian manifold. To directly apply this theoretical PDE to empirical single- cell RNA sequencing (scRNA-seq) datasets, we overcome the destructive measurement limitations of scRNA-seq by replacing point-to-point trajectory tracking with a distribution-matching paradigm. Utilizing a Deep Forward-Backward StochasticDifferential Equation (FBSDE) architecture combined with a Multi-scale Maximum Mean Discrepancy (MMD) Hybrid Loss, we enable the optimal transport and control of cellular populations towards healthy states. The complete theoretical derivation and its PyTorch pipeline are provided.

Zenodo (CERN European Organization for Nuclear Research)
Gene Regulatory Network Analysis
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