Latest Research in Spatial Transcriptomics and Cell Atlas

Top Research Topics in Spatial Transcriptomics and Cell Atlas

• Single-cell and spatial transcriptomics — 61 papers
• Computer Vision and Pattern Recognition — 16 papers
• HIV Research and Treatment — 11 papers
• DNA Repair Mechanisms — 10 papers
• AI in cancer detection — 9 papers
• Cell Image Analysis Techniques — 7 papers
• Methodology — 6 papers
• interferon and immune responses — 5 papers
• Telomeres, Telomerase, and Senescence — 5 papers
• Genomics and Chromatin Dynamics — 5 papers

Highest-Cited Papers

1. Modulation of the cytoskeleton for cancer therapy (8 citations)
2. Beyond benchmarking: an expert-guided consensus approach to spatially aware clustering (3 citations)
3. STcompare: comparative spatial transcriptomics data analysis of structurally matched tissues to characterize differentially spatially patterned genes (2 citations)
4. FastCNV: fast and accurate copy number variation prediction from high-definition spatial transcriptomics and scRNA-seq data (1 citations)
5. Macrophages transfer functional proteins to their surface during live-cell uptake (1 citations)
6. Weighted sliced inverse regression for scalable supervised dimensionality reduction of spatial transcriptomics data (1 citations)
7. Impact of Single‐Cell RNA Reference Selection for the Deconvolution of Breast Cancer Spatial Transcriptomics Datasets (1 citations)
8. Hex -MASP for mapping the whole-tissue spatial proteome and the intrabrain distribution of monoclonal antibodies (1 citations)
9. Extending single-cell proteomics from HeLa to small primary human immune cells
10. The BRCA1 coiled-coil domain is dispensable for suppression of tandem duplications and tolerance of FANCM loss
11. Dysregulation of DNA replication licensing factors in cancer
12. scTrans-SVD: dual-view learning with a low-rank representation for label-limited cell type annotation in single-cell transcriptomics
13. Extracellular vesicle miRNAs reflect treatment duration and inflammation state in long-term treated people living with HIV
14. ConvexGating infers gating strategies from clusters in single cell cytometry data
15. Proteasome subunit-based biomarker panel for early diagnosis of acute respiratory distress syndrome and therapeutic targeting of PSMB8 in a mouse model
16. Cell-type-specific surfaceome profiling of 100-500 isolated cells using a droplet-based Magnetic Affinity Purification System
17. Secreted ORF8 reprograms macrophages to enhance SARS-CoV-2 infection of lung epithelial cells
18. ReScale4DL: balancing pixel and contextual information for enhanced bioimage segmentation
19. Dual contributions of Xrp1 to genome integrity through the DNA damage response and cell competition
20. Domain Elastic Transform: Bayesian Function Registration for High-Dimensional Scientific Data

Sub-Regions

• Bioinformatics and Genomic Networks — 57 papers
• AI in cancer detection — 57 papers
• Single-cell and spatial transcriptomics — 45 papers
• Extracellular vesicles in disease — 42 papers
• Genomics and Chromatin Dynamics — 24 papers
• DNA Repair Mechanisms — 17 papers