Free, user-friendly web-platform for integrative species delimitation analyses, inc. video tutorials

This document introduces the Spart explorer web platform developed under Task 6.3. This tool enables integrative species delimitation analyses through a free, user-friendly web platform. Species hypothesis can be inferred from a DNA alignment in FASTA format using ASAP or ABGD methods. Limes then compares the different partitions qualitatively and associates them with a score independently of the method used. Last but not least, Spart explorer lets you graphically visualise results, whether generated or imported from pre-existing data. In this document, we present several screenshots showing the graphical user interface and the various options available, as well as a link to a video which has the same purpose. We conclude by mentioning the limitations and prospects for improvement of this web platform.

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Publication Details

Published
2026-11-11
DOI
https://doi.org/10.3897/arphapreprints.e222790
Primary Topic
Genomics and Phylogenetic Studies
Type
preprint
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preprint

Free, user-friendly web-platform for integrative species delimitation analyses, inc. video tutorials

Nicolas Puillandre, Tony Robillard, Teddy Bruy, Aurélien Miralles et al.
Genomics and Phylogenetic Studies
preprint

Free, user-friendly web-platform for integrative species delimitation analyses, inc. video tutorials

Nicolas Puillandre, Tony Robillard, Teddy Bruy, Aurélien Miralles, Magalie Castelin, Julie Bouché
preprint en

Abstract

This document introduces the Spart explorer web platform developed under Task 6.3. This tool enables integrative species delimitation analyses through a free, user-friendly web platform. Species hypothesis can be inferred from a DNA alignment in FASTA format using ASAP or ABGD methods. Limes then compares the different partitions qualitatively and associates them with a score independently of the method used. Last but not least, Spart explorer lets you graphically visualise results, whether generated or imported from pre-existing data. In this document, we present several screenshots showing the graphical user interface and the various options available, as well as a link to a video which has the same purpose. We conclude by mentioning the limitations and prospects for improvement of this web platform.

Centre National de la Recherche Scientifique (FR), École Pratique des Hautes Études (FR), Muséum national d'Histoire naturelle (FR)
Genomics and Phylogenetic Studies
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