Lightweight Pixel-Wise Lesion Segmentation and Severity Estimation of Tobacco Leaf Disease from Close-Up Images: A Group-Aware Benchmark with Robustness Analysis

Lesion area is the basis of disease severity rating in tobacco, but visual rating is subjective, and most deep-learning studies classify whole images on random splits that can leak near-duplicate photographs. This study evaluates lesion segmentation and severity estimation on 3,485 close-up tobacco leaf images (800 × 800 px) with pixel-level masks, using group-aware training, validation and test partitions (3 independent splits) and a lightweight pixel-wise gradient-boosting classifier operating on colour, texture and image-normalised features. The full model reached a Dice coefficient of 0.837 ± 0.020 (IoU 0.720 ± 0.029), compared with 0.187 for the best Otsu-threshold baseline. Predicted lesion area agreed closely with annotation (Pearson r = 0.981; mean absolute error 0.39 percentage points) and reproduced a four-grade severity scale with 90.0% accuracy (quadratic-weighted κ = 0.913). Without retraining, texture features improved robustness to occlusion and brightness change but caused a collapse under Gaussian noise (Dice 0.143); noise-aware training and a median pre-filter restored Dice to 0.763 and 0.666, respectively. Inference took about 79 ms per image on one CPU core. The data carry no disease-class labels, so no pathogen identification is claimed. The results provide a reproducible CPU-only baseline and a transparent account of failure modes for lesion-level phenotyping of tobacco.

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Publication Details

Journal
Preprints.org
Published
2026-11-11
DOI
https://doi.org/10.20944/preprints202611.1132.v1
Primary Topic
Smart Agriculture and AI
Type
preprint
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preprint

Lightweight Pixel-Wise Lesion Segmentation and Severity Estimation of Tobacco Leaf Disease from Close-Up Images: A Group-Aware Benchmark with Robustness Analysis

Destine Mashava, Willy Stephen Tounsi Fokui, Tawanda Mushiri, David Sinkhonde et al.
Preprints.org
Smart Agriculture and AI
preprint

Lightweight Pixel-Wise Lesion Segmentation and Severity Estimation of Tobacco Leaf Disease from Close-Up Images: A Group-Aware Benchmark with Robustness Analysis

Destine Mashava, Willy Stephen Tounsi Fokui, Tawanda Mushiri, David Sinkhonde, Mthulisi Ngwenya
preprint en

Abstract

Lesion area is the basis of disease severity rating in tobacco, but visual rating is subjective, and most deep-learning studies classify whole images on random splits that can leak near-duplicate photographs. This study evaluates lesion segmentation and severity estimation on 3,485 close-up tobacco leaf images (800 × 800 px) with pixel-level masks, using group-aware training, validation and test partitions (3 independent splits) and a lightweight pixel-wise gradient-boosting classifier operating on colour, texture and image-normalised features. The full model reached a Dice coefficient of 0.837 ± 0.020 (IoU 0.720 ± 0.029), compared with 0.187 for the best Otsu-threshold baseline. Predicted lesion area agreed closely with annotation (Pearson r = 0.981; mean absolute error 0.39 percentage points) and reproduced a four-grade severity scale with 90.0% accuracy (quadratic-weighted κ = 0.913). Without retraining, texture features improved robustness to occlusion and brightness change but caused a collapse under Gaussian noise (Dice 0.143); noise-aware training and a median pre-filter restored Dice to 0.763 and 0.666, respectively. Inference took about 79 ms per image on one CPU core. The data carry no disease-class labels, so no pathogen identification is claimed. The results provide a reproducible CPU-only baseline and a transparent account of failure modes for lesion-level phenotyping of tobacco.

Preprints.org
Smart Agriculture and AI
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