GC–MS Profiling and Molecular Docking of Clove Leaf Oil Constituents Against Xanthine Oxidase

Background: Hyperuricemia and gout are metabolic disorders whose prevalence continues to increase and are closely associated with the activity of the enzyme xanthine oxidase (XO), which catalyzes the formation of uric acid. The use of synthetic XO inhibitors such as allopurinol and febuxostat is still limited by the risk of adverse effects during long-term therapy; therefore, the exploration of natural compounds is relevant. Objective: This study aimed to identify the dominant volatile constituents of clove leaf essential oil (Syzygium aromaticum) using gas chromatography–mass spectrometry (GC–MS) and to assess the predicted binding of eugenol and β-caryophyllene to xanthine oxidase through molecular docking. Methods: Clove leaf essential oil was obtained by steam–water distillation and profiled by GC–MS using an SH-Rxi-5Sil MS column. Eugenol and β-caryophyllene, the two dominant constituents, were docked to the active site of xanthine oxidase using PyRx 0.8 and visualized with PyMOL 2.0.4; allopurinol and febuxostat served as reference ligands. Results: GC–MS profiling identified eugenol (71.97%; retention time, 10.036 min) and β-caryophyllene (23.68%; retention time, 10.852 min) as the dominant constituents. Molecular docking predicted binding energies of −7.0 kcal/mol for eugenol and −7.2 kcal/mol for β-caryophyllene, compared with −6.3 kcal/mol for allopurinol and −9.1 kcal/mol for febuxostat. These values indicate predicted ligand–protein affinity and do not constitute direct evidence of enzyme inhibition. Conclusion: Eugenol and β-caryophyllene from clove leaf essential oil showed potentially relevant predicted interactions with xanthine oxidase in silico. Experimental enzyme-inhibition assays are required before biological inhibitory activity or therapeutic potential can be established.

Authors

Institutions

Publication Details

Journal
Glosains Jurnal Sains Global Indonesia
Published
2026-11-10
DOI
https://doi.org/10.59784/glosains.v7i5.961
Primary Topic
Gout, Hyperuricemia, Uric Acid
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
NOV
article

GC–MS Profiling and Molecular Docking of Clove Leaf Oil Constituents Against Xanthine Oxidase

Harlinda Kuspradini, Ahmad Zamroni, Farida Aryani, Rahma Yanti T
Glosains Jurnal Sains Global Indonesia
Gout, Hyperuricemia, Uric Acid
article

GC–MS Profiling and Molecular Docking of Clove Leaf Oil Constituents Against Xanthine Oxidase

Harlinda Kuspradini, Ahmad Zamroni, Farida Aryani, Rahma Yanti T
article en

Abstract

Background: Hyperuricemia and gout are metabolic disorders whose prevalence continues to increase and are closely associated with the activity of the enzyme xanthine oxidase (XO), which catalyzes the formation of uric acid. The use of synthetic XO inhibitors such as allopurinol and febuxostat is still limited by the risk of adverse effects during long-term therapy; therefore, the exploration of natural compounds is relevant. Objective: This study aimed to identify the dominant volatile constituents of clove leaf essential oil (Syzygium aromaticum) using gas chromatography–mass spectrometry (GC–MS) and to assess the predicted binding of eugenol and β-caryophyllene to xanthine oxidase through molecular docking. Methods: Clove leaf essential oil was obtained by steam–water distillation and profiled by GC–MS using an SH-Rxi-5Sil MS column. Eugenol and β-caryophyllene, the two dominant constituents, were docked to the active site of xanthine oxidase using PyRx 0.8 and visualized with PyMOL 2.0.4; allopurinol and febuxostat served as reference ligands. Results: GC–MS profiling identified eugenol (71.97%; retention time, 10.036 min) and β-caryophyllene (23.68%; retention time, 10.852 min) as the dominant constituents. Molecular docking predicted binding energies of −7.0 kcal/mol for eugenol and −7.2 kcal/mol for β-caryophyllene, compared with −6.3 kcal/mol for allopurinol and −9.1 kcal/mol for febuxostat. These values indicate predicted ligand–protein affinity and do not constitute direct evidence of enzyme inhibition. Conclusion: Eugenol and β-caryophyllene from clove leaf essential oil showed potentially relevant predicted interactions with xanthine oxidase in silico. Experimental enzyme-inhibition assays are required before biological inhibitory activity or therapeutic potential can be established.

Glosains Jurnal Sains Global IndonesiaVol. 7(5)
Politeknik Pertanian Negeri Samarinda (ID)
Gout, Hyperuricemia, Uric Acid
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Laika access coming soon