Telomere-to-telomere gapless genome assembly of Hebanthe erianthos

Hebanthe erianthos (Poir.) Pedersen is a medicinal species of the family Amaranthaceae. A telomere-to-telomere (T2T) genome assembly was generated using ONT ultra-long reads, Illumina short reads, and Hi-C sequencing data. The final assembly spans 985.85 Mb and consists of 17 gap-free chromosomes, with a contig N50 of 62.65 Mb. Assembly quality assessment yielded a consensus QV of 49.70 and a BUSCO completeness score of 98.1%. The genome contains 71.39% repetitive sequences and 27,068 predicted protein-coding genes, of which 25,985 (96.00%) were functionally annotated. Associated datasets include genome assembly, gene annotation, repeat annotation, non-coding RNA annotation, transcriptome sequencing data, and chromosome interaction data.

Authors

Publication Details

Journal
China National GeneBank DataBase
Published
2026-11-11
DOI
https://doi.org/10.26036/cnp0010299
Primary Topic
Chromosomal and Genetic Variations
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
NOV
article

Telomere-to-telomere gapless genome assembly of Hebanthe erianthos

高旦(Dan Gao)
China National GeneBank DataBase
Chromosomal and Genetic Variations
article

Telomere-to-telomere gapless genome assembly of Hebanthe erianthos

高旦(Dan Gao)
article en

Abstract

Hebanthe erianthos (Poir.) Pedersen is a medicinal species of the family Amaranthaceae. A telomere-to-telomere (T2T) genome assembly was generated using ONT ultra-long reads, Illumina short reads, and Hi-C sequencing data. The final assembly spans 985.85 Mb and consists of 17 gap-free chromosomes, with a contig N50 of 62.65 Mb. Assembly quality assessment yielded a consensus QV of 49.70 and a BUSCO completeness score of 98.1%. The genome contains 71.39% repetitive sequences and 27,068 predicted protein-coding genes, of which 25,985 (96.00%) were functionally annotated. Associated datasets include genome assembly, gene annotation, repeat annotation, non-coding RNA annotation, transcriptome sequencing data, and chromosome interaction data.

China National GeneBank DataBase
Chromosomal and Genetic Variations
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Laika access coming soon