Multi-Agent Generative Artificial Intelligence for Transfusion Reaction Feature Extraction
BACKGROUND: Many transfusion reactions are not reported to hemovigilance systems, and the features needed to recognize them are often documented only in free-text clinical notes. We sought to develop and evaluate an open-source, multi-agent artificial intelligence (AI) pipeline to extract transfusion reaction features defined by the National Healthcare Safety Network (NHSN) Hemovigilance Module from clinical notes. METHODS: We curated 181 features from the NHSN protocol and developed a multi-stage pipeline that extracted features, their timing, and clinical details from free-text notes. Three open-weight large language models (Qwen 3.6-27B, GPT-OSS-120B, and Kimi K3) were applied to 50 notes from expert-written scenarios, published case reports, and MIMIC-IV discharge summaries. Two physicians independently evaluated every model output in a blinded interface. The primary analysis was restricted to feature occurrences with concordant physician assessments. RESULTS: Physicians agreed on 1,201 of 1,343 co-rated feature occurrences (89.4%; Krippendorff's alpha 0.73). Precision was above 0.98 for all models. Sensitivity was 0.774 (95% CI 0.745-0.800) for Kimi K3, 0.636 (0.604-0.667) for GPT-OSS-120B, and 0.624 (0.593-0.655) for Qwen 3.6-27B, and specificity ranged from 0.952 to 0.991. Omissions accounted for more than 94% of false negatives. Timing and clinical details were judged supported or reasonable in more than 92% and 97% of assessments, respectively. Results were consistent across note sources and in analyses including discordant assessments. CONCLUSION: Multi-agent AI pipelines provide a feasible method for extracting transfusion reaction signals from clinical notes with high precision. Our work may have applications in active hemovigilance, reaction classification, and big data research.
Authors
- Nicole Relke (ORCID: https://orcid.org/0000-0003-3416-6765)
- Jeremy W. Jacobs (ORCID: https://orcid.org/0000-0002-5719-9685)
- Ruchika Goel (ORCID: https://orcid.org/0000-0001-9653-9905)
- Andrew W.Y. Shih (ORCID: https://orcid.org/0000-0001-7107-2595)
- Garrett S. Booth (ORCID: https://orcid.org/0000-0002-8422-9480)
- Siddhartha Srivastava (ORCID: https://orcid.org/0000-0001-9361-8288)
- Sheharyar Raza (ORCID: https://orcid.org/0000-0002-8247-1484)
- Aman Anand (ORCID: https://orcid.org/0000-0002-4678-6526)
- Rounak Dubey (ORCID: https://orcid.org/0000-0002-9467-5759)
- Ayushi Kumari (ORCID: https://orcid.org/0009-0009-9298-5321)
- Widad Abdulwahab
- Ismail Raslan
- Laura Dilly
- Yulia Lin
- Jennifer Woo
Institutions
- Sunnybrook Health Science Centre (CA)
- Johns Hopkins University (US)
- University of Toronto (CA)
- Amity University (IN)
- Vanderbilt University (US)
- Queen's University (CA)
- Johns Hopkins Medicine (US)
- University of California San Diego (US)
- City of Hope (US)
- All India Institute of Medical Sciences, Nagpur (IN)
- Canadian Blood Services (CA)
- McMaster University (CA)
Publication Details
- Journal
- medRxiv
- Published
- 2026-11-09
- DOI
- https://doi.org/10.64898/2026.11.06.26367389
- Primary Topic
- Machine Learning in Healthcare
- Type
- preprint