Multi-Agent Generative Artificial Intelligence for Transfusion Reaction Feature Extraction

BACKGROUND: Many transfusion reactions are not reported to hemovigilance systems, and the features needed to recognize them are often documented only in free-text clinical notes. We sought to develop and evaluate an open-source, multi-agent artificial intelligence (AI) pipeline to extract transfusion reaction features defined by the National Healthcare Safety Network (NHSN) Hemovigilance Module from clinical notes. METHODS: We curated 181 features from the NHSN protocol and developed a multi-stage pipeline that extracted features, their timing, and clinical details from free-text notes. Three open-weight large language models (Qwen 3.6-27B, GPT-OSS-120B, and Kimi K3) were applied to 50 notes from expert-written scenarios, published case reports, and MIMIC-IV discharge summaries. Two physicians independently evaluated every model output in a blinded interface. The primary analysis was restricted to feature occurrences with concordant physician assessments. RESULTS: Physicians agreed on 1,201 of 1,343 co-rated feature occurrences (89.4%; Krippendorff's alpha 0.73). Precision was above 0.98 for all models. Sensitivity was 0.774 (95% CI 0.745-0.800) for Kimi K3, 0.636 (0.604-0.667) for GPT-OSS-120B, and 0.624 (0.593-0.655) for Qwen 3.6-27B, and specificity ranged from 0.952 to 0.991. Omissions accounted for more than 94% of false negatives. Timing and clinical details were judged supported or reasonable in more than 92% and 97% of assessments, respectively. Results were consistent across note sources and in analyses including discordant assessments. CONCLUSION: Multi-agent AI pipelines provide a feasible method for extracting transfusion reaction signals from clinical notes with high precision. Our work may have applications in active hemovigilance, reaction classification, and big data research.

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Publication Details

Journal
medRxiv
Published
2026-11-09
DOI
https://doi.org/10.64898/2026.11.06.26367389
Primary Topic
Machine Learning in Healthcare
Type
preprint
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preprint

Multi-Agent Generative Artificial Intelligence for Transfusion Reaction Feature Extraction

Nicole Relke, Jeremy W. Jacobs, Ruchika Goel, Andrew W.Y. Shih et al.
medRxiv
Machine Learning in Healthcare
preprint

Multi-Agent Generative Artificial Intelligence for Transfusion Reaction Feature Extraction

Nicole Relke, Jeremy W. Jacobs, Ruchika Goel, Andrew W.Y. Shih, Garrett S. Booth, Siddhartha Srivastava, Sheharyar Raza, Aman Anand, Rounak Dubey, Ayushi Kumari, Widad Abdulwahab, Ismail Raslan, Laura Dilly, Yulia Lin, Jennifer Woo
preprint en

Abstract

BACKGROUND: Many transfusion reactions are not reported to hemovigilance systems, and the features needed to recognize them are often documented only in free-text clinical notes. We sought to develop and evaluate an open-source, multi-agent artificial intelligence (AI) pipeline to extract transfusion reaction features defined by the National Healthcare Safety Network (NHSN) Hemovigilance Module from clinical notes. METHODS: We curated 181 features from the NHSN protocol and developed a multi-stage pipeline that extracted features, their timing, and clinical details from free-text notes. Three open-weight large language models (Qwen 3.6-27B, GPT-OSS-120B, and Kimi K3) were applied to 50 notes from expert-written scenarios, published case reports, and MIMIC-IV discharge summaries. Two physicians independently evaluated every model output in a blinded interface. The primary analysis was restricted to feature occurrences with concordant physician assessments. RESULTS: Physicians agreed on 1,201 of 1,343 co-rated feature occurrences (89.4%; Krippendorff's alpha 0.73). Precision was above 0.98 for all models. Sensitivity was 0.774 (95% CI 0.745-0.800) for Kimi K3, 0.636 (0.604-0.667) for GPT-OSS-120B, and 0.624 (0.593-0.655) for Qwen 3.6-27B, and specificity ranged from 0.952 to 0.991. Omissions accounted for more than 94% of false negatives. Timing and clinical details were judged supported or reasonable in more than 92% and 97% of assessments, respectively. Results were consistent across note sources and in analyses including discordant assessments. CONCLUSION: Multi-agent AI pipelines provide a feasible method for extracting transfusion reaction signals from clinical notes with high precision. Our work may have applications in active hemovigilance, reaction classification, and big data research.

medRxiv
Sunnybrook Health Science Centre (CA), Johns Hopkins University (US), University of Toronto (CA), Amity University (IN), Vanderbilt University (US), Queen's University (CA), Johns Hopkins Medicine (US), University of California San Diego (US), City of Hope (US), All India Institute of Medical Sciences, Nagpur (IN), Canadian Blood Services (CA), McMaster University (CA)
Machine Learning in Healthcare
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