The Genetic Code as an Ordered Quaternion Path: The Three Base Symmetries as the Three Units, the Reading Rule Modulo $\mathbf j$,\\ and the Codons Nature Reassigns

With the author's assignment of the four bases to the quaternion units, A = 1, C = i, G = j, U = k, and codons read as ordered (Path B) products, two exact results follow for the standard genetic code, and a registered prediction on the variant codes passes. The three base symmetries are the three units. Watson–Crick complementation is multiplication by k, the transitions are multiplication by j, and Rumer's transformation U ↔ G, C ↔ A, which carries the eight four-fold ("strong") doublets onto the eight split ("weak") doublets, is multiplication by i, with ±q counted as one destination. The third base is read modulo j. Multiplication by j exchanges A ↔ G and C ↔ U, so the purines form the coset {1, j} and the pyrimidines the coset {i, k} = i{1, j}. In every weak box the meaning depends only on the coset of the third base, with exactly two exceptions (AUA/AUG and UGA/UGG). In every strong box the third base is not read. Nature reassigns the two exceptions. In a test registered before counting, the 65 codon reassignments in the 25 variant codes listed by NCBI fall on AUA or UGA 20 times (30.8%), 9.8 times the uniform rate (p = 6 × 10^-15); UGA is the most reassigned codon of all. The vertebrate and ascidian mitochondrial codes, which reassign both, obey the modulo-j rule with no exception. The companion prediction, that each reassignment moves a code toward the rule, failed as registered. In the standard code the multiplicities that follow are {1, 2, 3, 4, 6}, the set of n for which cos(360°/n) is rational; this set holds in 14 of 26 codes and is not required. The translated chain itself is the ordered backbone product of Path B, which requires one sense: each mirror residue costs three backbone hydrogen bonds, a count that matches seventeen measured peptides with no adjusted parameter.

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-11-09
DOI
https://doi.org/10.5281/zenodo.24090412
Primary Topic
RNA and protein synthesis mechanisms
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
NOV
article

The Genetic Code as an Ordered Quaternion Path: The Three Base Symmetries as the Three Units, the Reading Rule Modulo $\mathbf j$,\\ and the Codons Nature Reassigns

Willie Johnson
Zenodo (CERN European Organization for Nuclear Research)
RNA and protein synthesis mechanisms
article

The Genetic Code as an Ordered Quaternion Path: The Three Base Symmetries as the Three Units, the Reading Rule Modulo $\mathbf j$,\\ and the Codons Nature Reassigns

Willie Johnson
article en

Abstract

With the author's assignment of the four bases to the quaternion units, A = 1, C = i, G = j, U = k, and codons read as ordered (Path B) products, two exact results follow for the standard genetic code, and a registered prediction on the variant codes passes. The three base symmetries are the three units. Watson–Crick complementation is multiplication by k, the transitions are multiplication by j, and Rumer's transformation U ↔ G, C ↔ A, which carries the eight four-fold ("strong") doublets onto the eight split ("weak") doublets, is multiplication by i, with ±q counted as one destination. The third base is read modulo j. Multiplication by j exchanges A ↔ G and C ↔ U, so the purines form the coset {1, j} and the pyrimidines the coset {i, k} = i{1, j}. In every weak box the meaning depends only on the coset of the third base, with exactly two exceptions (AUA/AUG and UGA/UGG). In every strong box the third base is not read. Nature reassigns the two exceptions. In a test registered before counting, the 65 codon reassignments in the 25 variant codes listed by NCBI fall on AUA or UGA 20 times (30.8%), 9.8 times the uniform rate (p = 6 × 10^-15); UGA is the most reassigned codon of all. The vertebrate and ascidian mitochondrial codes, which reassign both, obey the modulo-j rule with no exception. The companion prediction, that each reassignment moves a code toward the rule, failed as registered. In the standard code the multiplicities that follow are {1, 2, 3, 4, 6}, the set of n for which cos(360°/n) is rational; this set holds in 14 of 26 codes and is not required. The translated chain itself is the ordered backbone product of Path B, which requires one sense: each mirror residue costs three backbone hydrogen bonds, a count that matches seventeen measured peptides with no adjusted parameter.

Zenodo (CERN European Organization for Nuclear Research)
RNA and protein synthesis mechanisms
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Laika access coming soon