Stratified few-label protocols can overstate macro-averaged metrics for tabular foundation models

Tabular foundation models classify a new table's rows from a few labelled rows. Their benchmarks often label equally many rows of each class; a practitioner without labels can only label random rows. We show that this stratified labelling overstates macro-F1, the F1 score averaged over all classes. A stratified draw is a random draw conditioned on equal class counts, so the gain splits into a coverage part, from random draws that miss a class, and a balance part, from unequal class counts. On tables kept unopened until a final analysis, stratified labelling raised macro-F1 by +0.030 to +0.075 for four models at one to ten labels per class (+0.013 to +0.058 at three to ten). The gain is large where a missed class is costly, and too small to confirm where it is cheap. On 39 tables published after every model tested, class counts alone ranked the gains (Spearman 0.72) but overstated their size; a model of this cost, fitted on benchmark tables and fed with each table's runs, tracked them (Spearman 0.86). Stratified labelling also lowers accuracy on imbalanced tables and can change which model wins. We propose reporting few-label results under random labelling, with the share of draws that miss a class. Preprint, not peer reviewed. Supplementary material in the second file.

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-11-09
DOI
https://doi.org/10.5281/zenodo.24091866
Primary Topic
Machine Learning and Data Classification
Type
preprint
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preprint

Stratified few-label protocols can overstate macro-averaged metrics for tabular foundation models

Felipe Provezano Coutinho
Zenodo (CERN European Organization for Nuclear Research)
Machine Learning and Data Classification
preprint

Stratified few-label protocols can overstate macro-averaged metrics for tabular foundation models

Felipe Provezano Coutinho
preprint en

Abstract

Tabular foundation models classify a new table's rows from a few labelled rows. Their benchmarks often label equally many rows of each class; a practitioner without labels can only label random rows. We show that this stratified labelling overstates macro-F1, the F1 score averaged over all classes. A stratified draw is a random draw conditioned on equal class counts, so the gain splits into a coverage part, from random draws that miss a class, and a balance part, from unequal class counts. On tables kept unopened until a final analysis, stratified labelling raised macro-F1 by +0.030 to +0.075 for four models at one to ten labels per class (+0.013 to +0.058 at three to ten). The gain is large where a missed class is costly, and too small to confirm where it is cheap. On 39 tables published after every model tested, class counts alone ranked the gains (Spearman 0.72) but overstated their size; a model of this cost, fitted on benchmark tables and fed with each table's runs, tracked them (Spearman 0.86). Stratified labelling also lowers accuracy on imbalanced tables and can change which model wins. We propose reporting few-label results under random labelling, with the share of draws that miss a class. Preprint, not peer reviewed. Supplementary material in the second file.

Zenodo (CERN European Organization for Nuclear Research)
Machine Learning and Data Classification
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Stratified few-label protocols can overstate macro-averaged metrics for tabular foundation models — Felipe Provezano Coutinho · Zenodo (CERN European Organization for Nuclear Research) (2026) | TGRS Research Map | TGRS