Oligomerization of DNAJB6b involves the substrate binding domains while largely preserving J-domain autoinhibition

This repository contains the starting structures, topology files, and numerical analysis data associated with the molecular dynamics simulations of DNAJB6b oligomerization. The analysis data include intermolecular and intramolecular contact distributions, clustering results, and hydrodynamic-radius calculations for the three independent simulation replicas. Supplementary movies showing the time evolution of the one-dimensional (1D) intermolecular contact distribution for each of the three DNAJB6b oligomerization simulation replicas are also provided.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-11-09
DOI
https://doi.org/10.5281/zenodo.16994993
Primary Topic
Protein Structure and Dynamics
Type
article
Field-Weighted Citation Impact
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article

Oligomerization of DNAJB6b involves the substrate binding domains while largely preserving J-domain autoinhibition

Vasista Adupa, Patrick R. Onck
Zenodo (CERN European Organization for Nuclear Research)
Protein Structure and Dynamics
article

Oligomerization of DNAJB6b involves the substrate binding domains while largely preserving J-domain autoinhibition

Vasista Adupa, Patrick R. Onck
article en

Abstract

This repository contains the starting structures, topology files, and numerical analysis data associated with the molecular dynamics simulations of DNAJB6b oligomerization. The analysis data include intermolecular and intramolecular contact distributions, clustering results, and hydrodynamic-radius calculations for the three independent simulation replicas. Supplementary movies showing the time evolution of the one-dimensional (1D) intermolecular contact distribution for each of the three DNAJB6b oligomerization simulation replicas are also provided.

Zenodo (CERN European Organization for Nuclear Research)
University of Groningen (NL)
Protein Structure and Dynamics
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