Additional file 2 of SCAN: a cross-species single-cell transcriptome resource for domestic animals—revealing divergent spermatogenesis in avian and mammalian systems

Additional file 2: Fig. S1. Demonstration of data search and exploration in SCAN. Fig. S2. Visualization of single-cell data analysis. Fig. S3. The marker genes module. Fig. S4. Cellular composition of testis tissues across the five species. Fig. S5. Enrichment analysis of germ cells from four mammalian species. Fig. S6. Analysis of conserved and species-specific germ cell genes in testicular tissues across five species. Fig. S7. Cell–cell communication analysis across five species. Fig. S8. Pseudotime analysis of four germ cell types across five species. Fig. S9. Comparison of three cell annotation methods applied to the chicken leg muscle tissue. Fig. S10. Comparison of three cell annotation methods applied to the chicken breast muscle. Fig. S11. Cell type-specific marker gene expression profiles in CARD-annotated scRNA-seq datasets. Fig. S12. UMAP visualization of cell type-specific marker genes in CARD-annotated scRNA-seq datasets. Fig. S13. Sankey diagrams comparing CARD-based annotations with manual annotations.