Distortion-Resistant Hashing for DNA, implemented and compared at matched specificity

Error tolerance doesn’t pay inside a single hash (proved and certified bounds), but in the query - likelihood probes, and best after the anchor: one hit + log-likelihood extension (ANS-style connected redundancy) instead of chains of seeds. DRH implemented and compared at matched specificity on simulated and real nanopore reads

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-11-07
DOI
https://doi.org/10.5281/zenodo.24042624
Primary Topic
Algorithms and Data Compression
Type
article
Field-Weighted Citation Impact
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article

Distortion-Resistant Hashing for DNA, implemented and compared at matched specificity

Jarek Duda
1 links
Zenodo (CERN European Organization for Nuclear Research)
Algorithms and Data Compression
article

Distortion-Resistant Hashing for DNA, implemented and compared at matched specificity

Jarek Duda
article en

Abstract

Error tolerance doesn’t pay inside a single hash (proved and certified bounds), but in the query - likelihood probes, and best after the anchor: one hit + log-likelihood extension (ANS-style connected redundancy) instead of chains of seeds. DRH implemented and compared at matched specificity on simulated and real nanopore reads

Zenodo (CERN European Organization for Nuclear Research)
Openalex Percentile: Top 19%
Algorithms and Data Compression
DOIOpen Access PDFOpenAlex
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Distortion-Resistant Hashing for DNA, implemented and compared at matched specificity — Jarek Duda · Zenodo (CERN European Organization for Nuclear Research) (2026) | TGRS Research Map | TGRS