The genome sequence of sour fig, Carpobrotus edulis N.E.Br. (Caryophyllales: Aizoaceae)

We present a genome assembly of Carpobrotus edulis (sour fig; Streptophyta; Magnoliopsida; Caryophyllales; Aizoaceae). The assembly consists of two haplotypes with total lengths of 939.89 megabases and 955.96 megabases. Most of the haplotype 1 assembly (93.62%) was scaffolded into nine chromosomal pseudomolecules. Haplotype 2 was assembled to scaffold level. The mitochondrial sequences have lengths of 3333.84 and 189.62 kilobases and the plastid genome assembly has a length of 148.81 kilobases. Gene annotation of the haplotype 1 assembly by Ensembl identified 20,735 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

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Journal
Wellcome Open Research
Published
2026-11-06
DOI
https://doi.org/10.12688/wellcomeopenres.28107.1
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
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article

The genome sequence of sour fig, Carpobrotus edulis N.E.Br. (Caryophyllales: Aizoaceae)

Ilia J. Leitch, Maarten J. M. Christenhusz, Michael F. Fay, Darwin Tree of Life Barcoding Collective et al.
10 links
Wellcome Open Research
Genomics and Phylogenetic Studies
article

The genome sequence of sour fig, Carpobrotus edulis N.E.Br. (Caryophyllales: Aizoaceae)

Ilia J. Leitch, Maarten J. M. Christenhusz, Michael F. Fay, Darwin Tree of Life Barcoding Collective, Royal Botanic Gardens Kew Genome Acquisition Lab, Tree of Life Core Informatics collective
article en

Abstract

We present a genome assembly of Carpobrotus edulis (sour fig; Streptophyta; Magnoliopsida; Caryophyllales; Aizoaceae). The assembly consists of two haplotypes with total lengths of 939.89 megabases and 955.96 megabases. Most of the haplotype 1 assembly (93.62%) was scaffolded into nine chromosomal pseudomolecules. Haplotype 2 was assembled to scaffold level. The mitochondrial sequences have lengths of 3333.84 and 189.62 kilobases and the plastid genome assembly has a length of 148.81 kilobases. Gene annotation of the haplotype 1 assembly by Ensembl identified 20,735 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Wellcome Open ResearchVol. 11
Royal Botanic Gardens, Kew (GB), Botanical Society of Britain and Ireland (GB)
Wellcome Trust
Openalex Percentile: Top 27%
Genomics and Phylogenetic Studies
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