A reporter mouse model to map RIG-I expression and function in vivo
The cytosolic RNA sensor RIG-I is a critical component of the innate immune response to RNA viruses, yet few tools exist to track RIG-I in vivo. Herein, we report the development of a RIG-I reporter mouse, termed RIG-ImScar, that enables fluorescence imaging and tractable immunoprecipitation of RIG-I in vivo. These mice revealed enrichment of RIG-I expression in circulatory, lymphoid, and mucosal tissues and broad expression across immune cell types. RIG-I itself is upregulated in response to IFN. To distinguish RIG-I sentinel cells, which are programmed to express RIG-I at steady state, from IFN-responder cells, we crossed RIG-ImScar mice with Mx1GFP mice. Blocking IFNAR with a monoclonal antibody showed that basal RIG-I expression in immune cells was largely independent of type I IFN signaling, although Ly6Chi monocytes required IFNAR for RIG-I expression. To probe functional responses in vivo, we intranasally administered a RIG-I-specific agonist, SLR14. Mapping RIG-I expression across the lung identified alveolar macrophages as a critical RIG-I sensor cell population, and depletion of alveolar macrophages, but not neutrophils, slightly impaired lung IFN responses. Together, these findings support the use of the RIG-ImScar model to probe RIG-I dynamics in vivo and predict functional sensor cell populations across tissues.
Authors
- Anna Marie Pyle (ORCID: https://orcid.org/0000-0001-9045-8872)
- Stephen A. Ehrenzeller (ORCID: https://orcid.org/0000-0002-4078-5362)
- Akiko Iwasaki (ORCID: https://orcid.org/0000-0002-7824-9856)
- Dong-il Kwon
- Daniel Thoresen (ORCID: https://orcid.org/0000-0002-8292-3137)
- Richard Anthony Flavell (ORCID: https://orcid.org/0000-0003-4461-0778)
- Daniel O Richards
- Sergio Borunda (ORCID: https://orcid.org/0009-0006-2625-4465)
- Suhan Liu
- Timothy M Mehrmann
- Amy C Hinesley (ORCID: https://orcid.org/0009-0009-3098-3953)
- William M Phillbrick
Institutions
- Yale University (US)
Publication Details
- Journal
- bioRxiv (Cold Spring Harbor Laboratory)
- Published
- 2026-11-06
- DOI
- https://doi.org/10.64898/2026.11.04.764288
- Primary Topic
- interferon and immune responses
- Type
- preprint
Funders
- Howard Hughes Medical Institute
- National Institutes of Health
- National Institute of Arthritis and Musculoskeletal and Skin Diseases