A comprehensive review of detection, optical character recognition, and structuring methods for herbarium label digitization
Abstract Global herbarium digitization has produced over 50 million specimen images, many of which contain handwritten or printed labels with rich metadata such as species names, collection dates, localities, and ecological notes. Manual transcription of this information is labor intensive, error prone, and not scalable, which has motivated the development of automated solutions. This systematic review examines studies published between 2018 and 2026, identified through electronic database searches and backward reference screening, focusing on deep learning and computer vision approaches for herbarium label digitization. The reviewed methods include convolutional neural networks, transformer‐based models, large language models, and open‐source pipelines for optical character recognition and structured metadata extraction from historical and handwritten botanical records. The results highlight significant advances in label detection, text recognition accuracy, and metadata structuring enabled by deep learning techniques, although reported performance varies considerably depending on dataset quality, handwriting complexity, and domain adaptation strategies. Despite this progress, substantial challenges remain in handling historical handwriting styles, heterogeneous label layouts, and multilingual collections. Future research should emphasize the creation of curated benchmark datasets and the development of scalable, robust artificial intelligence (AI) pipelines to enhance the reliability, efficiency, and generalizability of automated herbarium digitization systems.
Authors
- Hanane Ariouat (ORCID: https://orcid.org/0009-0002-7066-4358)
- Eric Chenin (ORCID: https://orcid.org/0000-0001-9648-836X)
- Abderrazak Sebaa (ORCID: https://orcid.org/0000-0002-8742-1240)
- Edi Prifti (ORCID: https://orcid.org/0000-0001-8861-1305)
- Nicolas Turenne (ORCID: https://orcid.org/0000-0003-1229-5590)
- Jean‐Daniel Zucker (ORCID: https://orcid.org/0000-0002-5597-7922)
- Youcef Sklab (ORCID: https://orcid.org/0000-0002-7045-9402)
- Hiba Abbad (ORCID: https://orcid.org/0009-0001-0460-7657)
Institutions
- Inserm (FR)
- Sorbonne Université (FR)
- Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (FR)
- Nutrition et obésité : approches systémiques (FR)
- Assistance Publique – Hôpitaux de Paris (FR)
- Département mathématiques, informatique, sciences de la donnée et technologies du numérique (FR)
- Institut de Systématique, Évolution, Biodiversité (FR)
- Pitié-Salpêtrière Hospital (FR)
- Muséum national d'Histoire naturelle (FR)
- Unité de Modélisation Mathématique et Informatique des Systèmes Complexes (FR)
- Institut de Recherche pour le Développement (FR)
- Ecole supérieure en science et technologies de l'informatique et du numérique (DZ)
Publication Details
- Journal
- Applications in Plant Sciences
- Published
- 2026-11-06
- DOI
- https://doi.org/10.1002/aps3.70084
- Primary Topic
- Handwritten Text Recognition Techniques
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- Agence Nationale de la Recherche