COSMOBIOLOGY OF MIRNY. NOTE NO. 17: THE ELDERLINE. QUANTUM COOPERATIVITY, ENVIRONMENTAL MEMORY, AND THE DOMAIN LADDER

The first note on thesis No. 5 (biology) from Mirny's notes No. 15 closes the two-day cycle: from the massive unloading of Hill coefficients from SABIO-RK (236 entries) after three zero results, which turned out to be a confirmation of symmetry, to a specific memory mechanism of the environment. The test protein became an `Elder" --- UDP-\textit{N}-acetylglucosamine 2-epimerase (EC~5.1.3.14), a family that has survived to all three modern domains of life. The main results: (1)~the protein cooperativity coefficient $n$ is quantized. the oligomeric state of the carrier --- ladder $1{,}94 \to 2{,}0 \to 2{,}3 \to 2{,}7 \to 0{,}45/4{,}1$ It reads like a ladder of numbers binding sites; (2)~two cubes coexist in one protein - substrate ($n = 0{,}45$, anticooperative input) and grocery ($n = 4{,}1$, feedback switch); (3)~the memory of the medium has a measured molecular carrier: the loop of reassembly of the oligomer lives hours versus microseconds of the catalytic cycle. All statuses are named by the fact that they exist; scientific predecessors are indicated with gratitude.

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-11-05
DOI
https://doi.org/10.5281/zenodo.23988625
Primary Topic
Protein Structure and Dynamics
Type
preprint
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preprint

COSMOBIOLOGY OF MIRNY. NOTE NO. 17: THE ELDERLINE. QUANTUM COOPERATIVITY, ENVIRONMENTAL MEMORY, AND THE DOMAIN LADDER

Borodin Oleg BORODIN O.A.
Zenodo (CERN European Organization for Nuclear Research)
Protein Structure and Dynamics
preprint

COSMOBIOLOGY OF MIRNY. NOTE NO. 17: THE ELDERLINE. QUANTUM COOPERATIVITY, ENVIRONMENTAL MEMORY, AND THE DOMAIN LADDER

Borodin Oleg BORODIN O.A.
preprint en

Abstract

The first note on thesis No. 5 (biology) from Mirny's notes No. 15 closes the two-day cycle: from the massive unloading of Hill coefficients from SABIO-RK (236 entries) after three zero results, which turned out to be a confirmation of symmetry, to a specific memory mechanism of the environment. The test protein became an `Elder" --- UDP-\textit{N}-acetylglucosamine 2-epimerase (EC~5.1.3.14), a family that has survived to all three modern domains of life. The main results: (1)~the protein cooperativity coefficient $n$ is quantized. the oligomeric state of the carrier --- ladder $1{,}94 \to 2{,}0 \to 2{,}3 \to 2{,}7 \to 0{,}45/4{,}1$ It reads like a ladder of numbers binding sites; (2)~two cubes coexist in one protein - substrate ($n = 0{,}45$, anticooperative input) and grocery ($n = 4{,}1$, feedback switch); (3)~the memory of the medium has a measured molecular carrier: the loop of reassembly of the oligomer lives hours versus microseconds of the catalytic cycle. All statuses are named by the fact that they exist; scientific predecessors are indicated with gratitude.

Zenodo (CERN European Organization for Nuclear Research)
Protein Structure and Dynamics
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