Canonical 18-mer containment for checking barcoded Delftia Nanopore library assignments v1
Compare each barcoded read set against three study assemblies. On MinION flow cell FAZ36592, the run-level header sample_id=BAA-396R was shared across barcodes. This procedure checked whether barcode07 and barcode08 resembled previously assigned D. tsuruhatensis ATCC BAA-554 libraries. It uses archived sequence files and Python 3.9 or later (tested with 3.9.6). The containment calculation uses only the Python standard library.
Authors
- Carlos Goller (ORCID: https://orcid.org/0000-0002-2013-0334)
- Pushkar Sai (ORCID: https://orcid.org/0009-0001-8509-3159)
Publication Details
- Published
- 2026-11-04
- DOI
- https://doi.org/10.17504/protocols.io.8nlk5by2xl5r/v1
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- preprint