Classifying occupied and empty insertion sites from Delftia Nanopore reads v1

Classify individual long reads that span a repeat-associated chromosomal site in Delftia tsuruhatensis ATCC BAA-554. A first mapping pass selects candidate reads. Separate mappings to the chromosome and the element preserve evidence for both sides of the insertion.

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Publication Details

Published
2026-11-04
DOI
https://doi.org/10.17504/protocols.io.m7vznm924vx1/v1
Primary Topic
Genomics and Phylogenetic Studies
Type
preprint
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preprint

Classifying occupied and empty insertion sites from Delftia Nanopore reads v1

Carlos Goller, Pushkar Sai
Genomics and Phylogenetic Studies
preprint

Classifying occupied and empty insertion sites from Delftia Nanopore reads v1

Carlos Goller, Pushkar Sai
preprint en

Abstract

Classify individual long reads that span a repeat-associated chromosomal site in Delftia tsuruhatensis ATCC BAA-554. A first mapping pass selects candidate reads. Separate mappings to the chromosome and the element preserve evidence for both sides of the insertion.

Genomics and Phylogenetic Studies
DOIOpen Access PDFOpenAlex
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Classifying occupied and empty insertion sites from Delftia Nanopore reads v1 — Carlos Goller, Pushkar Sai · (2026) | TGRS Research Map | TGRS