Proteolytic feedback of quorum sensing promotes infection by Pseudomonas aeruginosa

Quorum sensing (QS) enables bacteria to coordinate collective behaviors in response to population density. However, the mechanisms by which QS circuits are reset or attenuated remain poorly understood. In Pseudomonas aeruginosa , the LuxR-type transcription factor RhlR controls virulence gene expression at high cell density, requiring both its cognate acyl-homoserine lactone signal and the accessory protein PqsE for full activity. Here, we show that RhlR abundance is actively controlled by ATP-dependent proteolysis through a self-limiting negative feedback loop. We identify an N-terminal degron within RhlR that is protected from protease recognition by PqsE binding and is required for degradation by both the Lon and the ClpP1-ClpP2 protease complex. Removal of this degron stabilizes RhlR, advancing the timing of QS-regulated gene expression, enhancing biofilm formation, imposes a competitive fitness cost in vitro , and reduced virulence in an acute mouse lung infection. Mechanistically, RhlR directly activates transcription of clpP2 , encoding a subunit of the protease complex required for its own degradation, establishing a self-limiting negative feedback loop. Disruption of RhlR DNA binding stabilizes the receptor through dual effects on reduced clpP2 expression and increased PqsE availability via the loss of RhlR-dependent repression of pqsE . Together, these findings reveal proteolytic turnover as an underappreciated regulatory layer of QS-activation and establish a mechanism for how receptor turnover may facilitate the transition away from high-cell density states.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-11-03
DOI
https://doi.org/10.64898/2026.11.02.763748
Primary Topic
Bacterial biofilms and quorum sensing
Type
preprint
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preprint

Proteolytic feedback of quorum sensing promotes infection by Pseudomonas aeruginosa

Megan L. Schumacher, Alicia G. Mendoza, Jon E. Paczkowski, Peter Allan Jorth et al.
bioRxiv (Cold Spring Harbor Laboratory)
Bacterial biofilms and quorum sensing
preprint

Proteolytic feedback of quorum sensing promotes infection by Pseudomonas aeruginosa

Megan L. Schumacher, Alicia G. Mendoza, Jon E. Paczkowski, Peter Allan Jorth, Sheryl Erica Fernandes, Caleb P. Mallery, Autumn N Pope, Hayden K Dillow
preprint en

Abstract

Quorum sensing (QS) enables bacteria to coordinate collective behaviors in response to population density. However, the mechanisms by which QS circuits are reset or attenuated remain poorly understood. In Pseudomonas aeruginosa , the LuxR-type transcription factor RhlR controls virulence gene expression at high cell density, requiring both its cognate acyl-homoserine lactone signal and the accessory protein PqsE for full activity. Here, we show that RhlR abundance is actively controlled by ATP-dependent proteolysis through a self-limiting negative feedback loop. We identify an N-terminal degron within RhlR that is protected from protease recognition by PqsE binding and is required for degradation by both the Lon and the ClpP1-ClpP2 protease complex. Removal of this degron stabilizes RhlR, advancing the timing of QS-regulated gene expression, enhancing biofilm formation, imposes a competitive fitness cost in vitro , and reduced virulence in an acute mouse lung infection. Mechanistically, RhlR directly activates transcription of clpP2 , encoding a subunit of the protease complex required for its own degradation, establishing a self-limiting negative feedback loop. Disruption of RhlR DNA binding stabilizes the receptor through dual effects on reduced clpP2 expression and increased PqsE availability via the loss of RhlR-dependent repression of pqsE . Together, these findings reveal proteolytic turnover as an underappreciated regulatory layer of QS-activation and establish a mechanism for how receptor turnover may facilitate the transition away from high-cell density states.

bioRxiv (Cold Spring Harbor Laboratory)
Cedars-Sinai Medical Center (US), Wadsworth Center (US), University at Albany, State University of New York (US)
Bacterial biofilms and quorum sensing
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