Mechano-chemical control of enzymatic activity in crowded environments

Macromolecular crowding has long been known to alter biochemical equilibria and enzyme kinetics, with reported catalytic activities that may increase, decrease, or vary non-monotonically with crowder concentration. Classical Michaelis--Menten kinetics does not by itself identify which of these responses should occur for a conformationally active enzyme. Here, we develop a minimal non-equilibrium mechano-chemical theory for a fueled enzyme embedded in a bath of passive crowders and uncover a fluctuation-induced effective force dipole acting on the enzyme subunits, akin to a generalized form of dispersion or depletion interaction. Since the preferred conformation of the model enzyme varies through the catalytic cycle, the fluctuation-induced mechanical load affects the relevant kinetic activation barriers and is sufficient to produce both monotonic inhibition and non-monotonic modification of turnover. The framework provides a thermodynamically consistent route for linking crowded environments to catalytic currents, suggesting how mechanical design principles could be leveraged to control enzymatic pathways.

Authors

Publication Details

Journal
arXiv (Cornell University)
Published
2026-11-02
DOI
https://doi.org/10.48550/arxiv.2611.03239
Primary Topic
Advanced Thermodynamics and Statistical Mechanics
Type
preprint
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
preprint

Mechano-chemical control of enzymatic activity in crowded environments

Luca Cocconi, Michalis Chatzittofi, Ramin Golestanian, Jakob Metson
arXiv (Cornell University)
Advanced Thermodynamics and Statistical Mechanics
preprint

Mechano-chemical control of enzymatic activity in crowded environments

Luca Cocconi, Michalis Chatzittofi, Ramin Golestanian, Jakob Metson
preprint en

Abstract

Macromolecular crowding has long been known to alter biochemical equilibria and enzyme kinetics, with reported catalytic activities that may increase, decrease, or vary non-monotonically with crowder concentration. Classical Michaelis--Menten kinetics does not by itself identify which of these responses should occur for a conformationally active enzyme. Here, we develop a minimal non-equilibrium mechano-chemical theory for a fueled enzyme embedded in a bath of passive crowders and uncover a fluctuation-induced effective force dipole acting on the enzyme subunits, akin to a generalized form of dispersion or depletion interaction. Since the preferred conformation of the model enzyme varies through the catalytic cycle, the fluctuation-induced mechanical load affects the relevant kinetic activation barriers and is sufficient to produce both monotonic inhibition and non-monotonic modification of turnover. The framework provides a thermodynamically consistent route for linking crowded environments to catalytic currents, suggesting how mechanical design principles could be leveraged to control enzymatic pathways.

arXiv (Cornell University)
Advanced Thermodynamics and Statistical Mechanics
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Laika access coming soon
Mechano-chemical control of enzymatic activity in crowded environments — Luca Cocconi, Michalis Chatzittofi, et al. · arXiv (Cornell University) (2026) | TGRS Research Map | TGRS