Accumulation of two distinct alleles causes astringency loss in cultivated polyploid persimmon

Persimmon fruit accumulates high levels of proanthocyanidins (PAs), causing extreme astringency. In pollination-constant and non-astringent (PCNA) cultivars, PA accumulation ceases early in fruit development. Although the PCNA trait is recessively controlled by the ASTRINGENCY ( AST ) locus, its causal gene has remained unknown. Using haplotype-resolved forward genetics in a hexaploid genetic background, we identified the previously uncharacterized TANNIN ( TAN ) as the causal gene. Long-read sequencing revealed that PCNA originated through the accumulation of independently derived ast alleles that cause transcriptional deficiency of TAN . These findings resolve the complex genetic basis of natural astringency loss in persimmon and provide a framework for molecular breeding. Further investigation of TAN function would uncover mechanisms underlying massive accumulation of PAs in persimmon fruit and insight into specialized metabolite sequestration.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-11-03
DOI
https://doi.org/10.64898/2026.10.31.762479
Primary Topic
Genetic Mapping and Diversity in Plants and Animals
Type
preprint
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preprint

Accumulation of two distinct alleles causes astringency loss in cultivated polyploid persimmon

Ryutaro Tao, Akifumi Azuma, Atsushi Kono, Noriyuki Onoue et al.
bioRxiv (Cold Spring Harbor Laboratory)
Genetic Mapping and Diversity in Plants and Animals
preprint

Accumulation of two distinct alleles causes astringency loss in cultivated polyploid persimmon

Ryutaro Tao, Akifumi Azuma, Atsushi Kono, Noriyuki Onoue, Ryusuke Matsuzaki, Takuji Ichino, So‐ichiro Nishiyama, Keizo Yonemori, Takeo Shimizu, Yosuke Fujiwara, Hisayo Yamane, Toshihiro Saito, Akihiko Sato
preprint en

Abstract

Persimmon fruit accumulates high levels of proanthocyanidins (PAs), causing extreme astringency. In pollination-constant and non-astringent (PCNA) cultivars, PA accumulation ceases early in fruit development. Although the PCNA trait is recessively controlled by the ASTRINGENCY ( AST ) locus, its causal gene has remained unknown. Using haplotype-resolved forward genetics in a hexaploid genetic background, we identified the previously uncharacterized TANNIN ( TAN ) as the causal gene. Long-read sequencing revealed that PCNA originated through the accumulation of independently derived ast alleles that cause transcriptional deficiency of TAN . These findings resolve the complex genetic basis of natural astringency loss in persimmon and provide a framework for molecular breeding. Further investigation of TAN function would uncover mechanisms underlying massive accumulation of PAs in persimmon fruit and insight into specialized metabolite sequestration.

bioRxiv (Cold Spring Harbor Laboratory)
Ryukoku University (JP), National Agriculture and Food Research Organization (JP), Kobe Pharmaceutical University (JP), Kyoto University (JP)
Genetic Mapping and Diversity in Plants and Animals
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Accumulation of two distinct alleles causes astringency loss in cultivated polyploid persimmon — Ryutaro Tao, Akifumi Azuma, et al. · bioRxiv (Cold Spring Harbor Laboratory) (2026) | TGRS Research Map | TGRS