Accumulation of two distinct alleles causes astringency loss in cultivated polyploid persimmon
Persimmon fruit accumulates high levels of proanthocyanidins (PAs), causing extreme astringency. In pollination-constant and non-astringent (PCNA) cultivars, PA accumulation ceases early in fruit development. Although the PCNA trait is recessively controlled by the ASTRINGENCY ( AST ) locus, its causal gene has remained unknown. Using haplotype-resolved forward genetics in a hexaploid genetic background, we identified the previously uncharacterized TANNIN ( TAN ) as the causal gene. Long-read sequencing revealed that PCNA originated through the accumulation of independently derived ast alleles that cause transcriptional deficiency of TAN . These findings resolve the complex genetic basis of natural astringency loss in persimmon and provide a framework for molecular breeding. Further investigation of TAN function would uncover mechanisms underlying massive accumulation of PAs in persimmon fruit and insight into specialized metabolite sequestration.
Authors
- Ryutaro Tao (ORCID: https://orcid.org/0000-0001-7811-5789)
- Akifumi Azuma (ORCID: https://orcid.org/0000-0002-0100-835X)
- Atsushi Kono (ORCID: https://orcid.org/0000-0003-4104-4491)
- Noriyuki Onoue (ORCID: https://orcid.org/0000-0001-5765-4812)
- Ryusuke Matsuzaki (ORCID: https://orcid.org/0000-0001-7309-8449)
- Takuji Ichino (ORCID: https://orcid.org/0000-0001-9058-5660)
- So‐ichiro Nishiyama (ORCID: https://orcid.org/0000-0002-3451-6166)
- Keizo Yonemori (ORCID: https://orcid.org/0000-0002-2668-4899)
- Takeo Shimizu (ORCID: https://orcid.org/0000-0001-7340-7424)
- Yosuke Fujiwara (ORCID: https://orcid.org/0009-0003-6733-3782)
- Hisayo Yamane (ORCID: https://orcid.org/0000-0002-9044-7863)
- Toshihiro Saito
- Akihiko Sato
Institutions
- Ryukoku University (JP)
- National Agriculture and Food Research Organization (JP)
- Kobe Pharmaceutical University (JP)
- Kyoto University (JP)
Publication Details
- Journal
- bioRxiv (Cold Spring Harbor Laboratory)
- Published
- 2026-11-03
- DOI
- https://doi.org/10.64898/2026.10.31.762479
- Primary Topic
- Genetic Mapping and Diversity in Plants and Animals
- Type
- preprint