The transformer as a candidate canonical cortical microcircuit

Neuroscience hypothesizes a canonical microcircuit subserving cortical computation across brain systems. In artificial intelligence, neural networks have become a universal computational substrate. Here, we leverage newly available large-scale data and mapping techniques to compare neural network motifs to the brain. We embedded a spectrum of candidate microcircuit architectures within a common spatial macrocircuit, measuring alignment with an extensive battery of cortical signatures. We find that one specific circuit type--the transformer--uniquely captures fine-grained unit-level circuit details, population-level functional maps and neuronal activity patterns, and systems-level wiring efficiency and behavioral demands. The key ingredient enabling the transformer's success is a learned multiplicative component making relational information available without extensive long-range wiring. These results suggest striking convergence between computational motifs in natural and artificial intelligence.

Authors

Institutions

Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-11-02
DOI
https://doi.org/10.64898/2026.11.01.763457
Primary Topic
Neural dynamics and brain function
Type
preprint
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
preprint

The transformer as a candidate canonical cortical microcircuit

Daniel L. K. Yamins, Yash N. Shah
bioRxiv (Cold Spring Harbor Laboratory)
Neural dynamics and brain function
preprint

The transformer as a candidate canonical cortical microcircuit

Daniel L. K. Yamins, Yash N. Shah
preprint en

Abstract

Neuroscience hypothesizes a canonical microcircuit subserving cortical computation across brain systems. In artificial intelligence, neural networks have become a universal computational substrate. Here, we leverage newly available large-scale data and mapping techniques to compare neural network motifs to the brain. We embedded a spectrum of candidate microcircuit architectures within a common spatial macrocircuit, measuring alignment with an extensive battery of cortical signatures. We find that one specific circuit type--the transformer--uniquely captures fine-grained unit-level circuit details, population-level functional maps and neuronal activity patterns, and systems-level wiring efficiency and behavioral demands. The key ingredient enabling the transformer's success is a learned multiplicative component making relational information available without extensive long-range wiring. These results suggest striking convergence between computational motifs in natural and artificial intelligence.

bioRxiv (Cold Spring Harbor Laboratory)
Stanford University (US)
Neural dynamics and brain function
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Laika access coming soon
The transformer as a candidate canonical cortical microcircuit — Daniel L. K. Yamins, Yash N. Shah · bioRxiv (Cold Spring Harbor Laboratory) (2026) | TGRS Research Map | TGRS