Optimized cartesian coordinates of Cu(I) and Ag(I) dimers

Glossary L = 6-(diphenylphosphino)-2,2’-bipyridine dppm = (bis(diphenylphosphino)methane) dppa = (bis(diphenylphosphino)amine) Labelling of the compounds which geometry was optimized at different state (ground state, excited states): 1 = [Cu2(L)2dppm]2+ 2 = [Cu2(L)2dppa]2+ 3 = [Cu2(L)2OTf]+ 4 = [Ag2(L)2OTf]+ Computational method : Geometry optimizations of the ground state (S0) and the first excited states - first singlet excited state S1, second singlet excited state S2, first triplet excited state T1, second singlet excited state T2 - of the compounds 1-4 were performed using the quantum chemical program ORCA 6.1 at Density Functional Theory (DFT) and Time-Dependent DFT within the Tamm-Dancoff approximation (TDA-DFT) levels, respectively.s1-s5 The calculations employed the PBE0 hybrid functional,s6 ZORA-def2-TZVP all-electron basis set,s7 auxiliary basis set SARC/J, explicit relativistic treatment of the core electrons ZORA, and D3BJ dispersion corrections8 for both ground and excited-state optimizations. For the sake of comparison, in addition to the geometry optimization performed at 0 K in vacuum (VAC), the conductor-like polarizable continuum was used to implicitly take into account the solvent, dichloromethane.s9 For those calculations, the indication “DCM” is stipulated. The applied criterium of convergence of energy was 1·10−6 u.a. Harmonic vibrational frequency calculations were computed to ensure that the optimized structures are (local) minima of the potential energy surface. The X-Ray structural arrangements were used as starting geometries for the ground state geometry optimizations. The excited states TDA-DFT geometry optimizations were performed using the optimized ground state geometries as starting geometries. compound-label: 1, 2, 3 and 4 State: S0, S1, S2, T1, T2 (s1) Neese, F. The ORCA Program System. WIREs Comput. Mol. Sci. 2012, 2 (1), 73–78. https://doi.org/10.1002/wcms.81. (s2) Neese, F. Software Update: The ORCA Program System—Version 6.0. WIREs Comput. Mol. Sci. 2025, 15 (2), e70019. https://doi.org/10.1002/wcms.70019. (s3) Casida, M. E. Time-Dependent Density Functional Response Theory for Molecules. In Recent Advances in Computational Chemistry; WORLD SCIENTIFIC, 1995; Vol. 1, pp 155–192. https://doi.org/10.1142/9789812830586_0005. (s4) Tamm, Ig. Relativistic Interaction of Elementary Particles. In Selected Papers; Bolotovskii, B. M., Frenkel, V. Ya., Peierls, R., Eds.; Springer Berlin Heidelberg: Berlin, Heidelberg, 1991; pp 157–174. https://doi.org/10.1007/978-3-642-74626-0_12. (s5) Dancoff, S. M. Non-Adiabatic Meson Theory of Nuclear Forces. Phys. Rev. 1950, 78 (4), 382–385. https://doi.org/10.1103/PhysRev.78.382. (s6) Perdew, J. P.; Ernzerhof, M.; Burke, K. Rationale for Mixing Exact Exchange with Density Functional Approximations. J. Chem. Phys. 1996, 105 (22), 9982–9985. https://doi.org/10.1063/1.472933. (s7) Pantazis, D. A.; Chen, X.-Y.; Landis, C. R.; Neese, F. All-Electron Scalar Relativistic Basis Sets for Third-Row Transition Metal Atoms. J. Chem. Theory Comput. 2008, 4 (6), 908–919. https://doi.org/10.1021/ct800047t. (s8) Grimme, S.; Ehrlich, S.; Goerigk, L. Effect of the Damping Function in Dispersion Corrected Density Functional Theory. J. Comput. Chem. 2011, 32 (7), 1456–1465. https://doi.org/10.1002/jcc.21759. (s9) Barone, V.; Cossi, M. Quantum Calculation of Molecular Energies and Energy Gradients in Solution by a Conductor Solvent Model. J. Phys. Chem. A 1998, 102 (11), 1995–2001. https://doi.org/10.1021/jp9716997. (s10) Momma K.; Izumi, F. VESTA 3 for three-dimensional visualization of crystal, volumetric and morphology data, J. Appl. Crystallogr., 2011, 44, 1272–1276. https://doi.org/10.1107/S0021889811038970 List of the files containing the optimized Cartesian coordinates of each compunds. Their name is built as such: compound-label_state_VAC.xyz when no inclusion of solvent effect, compound-label_state_VAC.xyz 1_S0_DCM.xyz 1_S0_VAC.xyz 1_S1_DCM.xyz 1_S1_VAC.xyz 1_S2_DCM.xyz 1_S2_VAC.xyz 1_T1_DCM.xyz 1_T1_VAC.xyz 1_T2_DCM.xyz 1_T2_VAC.xyz 2_S0_DCM.xyz 2_S0_VAC.xyz 2_S1_DCM.xyz 2_S1_VAC.xyz 2_S2_DCM.xyz 2_S2_VAC.xyz 2_T1_DCM.xyz 2_T1_VAC.xyz 3_S0_DCM.xyz 3_S0_VAC.xyz 3_S1_DCM.xyz 3_S1_VAC.xyz 3_S2_DCM.xyz 3_S2_VAC.xyz 3_T1_DCM.xyz 3_T1_VAC.xyz 3_T2_DCM.xyz 3_T2_VAC.xyz 4_S0_DCM.xyz 4_S0_VAC.xyz 4_S1_DCM.xyz 4_S1_VAC.xyz 4_S2_DCM.xyz 4_S2_VAC.xyz 4_T1_DCM.xyz 4_T1_VAC.xyz 4_T2_DCM.xyz 4_T2_VAC.xyz

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Zenodo (CERN European Organization for Nuclear Research)
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2026-11-02
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https://doi.org/10.5281/zenodo.23887452
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Advanced Chemical Physics Studies
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article

Optimized cartesian coordinates of Cu(I) and Ag(I) dimers

Karine Costuas
Zenodo (CERN European Organization for Nuclear Research)
Advanced Chemical Physics Studies
article

Optimized cartesian coordinates of Cu(I) and Ag(I) dimers

Karine Costuas
article en

Abstract

Glossary L = 6-(diphenylphosphino)-2,2’-bipyridine dppm = (bis(diphenylphosphino)methane) dppa = (bis(diphenylphosphino)amine) Labelling of the compounds which geometry was optimized at different state (ground state, excited states): 1 = [Cu2(L)2dppm]2+ 2 = [Cu2(L)2dppa]2+ 3 = [Cu2(L)2OTf]+ 4 = [Ag2(L)2OTf]+ Computational method : Geometry optimizations of the ground state (S0) and the first excited states - first singlet excited state S1, second singlet excited state S2, first triplet excited state T1, second singlet excited state T2 - of the compounds 1-4 were performed using the quantum chemical program ORCA 6.1 at Density Functional Theory (DFT) and Time-Dependent DFT within the Tamm-Dancoff approximation (TDA-DFT) levels, respectively.s1-s5 The calculations employed the PBE0 hybrid functional,s6 ZORA-def2-TZVP all-electron basis set,s7 auxiliary basis set SARC/J, explicit relativistic treatment of the core electrons ZORA, and D3BJ dispersion corrections8 for both ground and excited-state optimizations. For the sake of comparison, in addition to the geometry optimization performed at 0 K in vacuum (VAC), the conductor-like polarizable continuum was used to implicitly take into account the solvent, dichloromethane.s9 For those calculations, the indication “DCM” is stipulated. The applied criterium of convergence of energy was 1·10−6 u.a. Harmonic vibrational frequency calculations were computed to ensure that the optimized structures are (local) minima of the potential energy surface. The X-Ray structural arrangements were used as starting geometries for the ground state geometry optimizations. The excited states TDA-DFT geometry optimizations were performed using the optimized ground state geometries as starting geometries. compound-label: 1, 2, 3 and 4 State: S0, S1, S2, T1, T2 (s1) Neese, F. The ORCA Program System. WIREs Comput. Mol. Sci. 2012, 2 (1), 73–78. https://doi.org/10.1002/wcms.81. (s2) Neese, F. Software Update: The ORCA Program System—Version 6.0. WIREs Comput. Mol. Sci. 2025, 15 (2), e70019. https://doi.org/10.1002/wcms.70019. (s3) Casida, M. E. Time-Dependent Density Functional Response Theory for Molecules. In Recent Advances in Computational Chemistry; WORLD SCIENTIFIC, 1995; Vol. 1, pp 155–192. https://doi.org/10.1142/9789812830586_0005. (s4) Tamm, Ig. Relativistic Interaction of Elementary Particles. In Selected Papers; Bolotovskii, B. M., Frenkel, V. Ya., Peierls, R., Eds.; Springer Berlin Heidelberg: Berlin, Heidelberg, 1991; pp 157–174. https://doi.org/10.1007/978-3-642-74626-0_12. (s5) Dancoff, S. M. Non-Adiabatic Meson Theory of Nuclear Forces. Phys. Rev. 1950, 78 (4), 382–385. https://doi.org/10.1103/PhysRev.78.382. (s6) Perdew, J. P.; Ernzerhof, M.; Burke, K. Rationale for Mixing Exact Exchange with Density Functional Approximations. J. Chem. Phys. 1996, 105 (22), 9982–9985. https://doi.org/10.1063/1.472933. (s7) Pantazis, D. A.; Chen, X.-Y.; Landis, C. R.; Neese, F. All-Electron Scalar Relativistic Basis Sets for Third-Row Transition Metal Atoms. J. Chem. Theory Comput. 2008, 4 (6), 908–919. https://doi.org/10.1021/ct800047t. (s8) Grimme, S.; Ehrlich, S.; Goerigk, L. Effect of the Damping Function in Dispersion Corrected Density Functional Theory. J. Comput. Chem. 2011, 32 (7), 1456–1465. https://doi.org/10.1002/jcc.21759. (s9) Barone, V.; Cossi, M. Quantum Calculation of Molecular Energies and Energy Gradients in Solution by a Conductor Solvent Model. J. Phys. Chem. A 1998, 102 (11), 1995–2001. https://doi.org/10.1021/jp9716997. (s10) Momma K.; Izumi, F. VESTA 3 for three-dimensional visualization of crystal, volumetric and morphology data, J. Appl. Crystallogr., 2011, 44, 1272–1276. https://doi.org/10.1107/S0021889811038970 List of the files containing the optimized Cartesian coordinates of each compunds. Their name is built as such: compound-label_state_VAC.xyz when no inclusion of solvent effect, compound-label_state_VAC.xyz 1_S0_DCM.xyz 1_S0_VAC.xyz 1_S1_DCM.xyz 1_S1_VAC.xyz 1_S2_DCM.xyz 1_S2_VAC.xyz 1_T1_DCM.xyz 1_T1_VAC.xyz 1_T2_DCM.xyz 1_T2_VAC.xyz 2_S0_DCM.xyz 2_S0_VAC.xyz 2_S1_DCM.xyz 2_S1_VAC.xyz 2_S2_DCM.xyz 2_S2_VAC.xyz 2_T1_DCM.xyz 2_T1_VAC.xyz 3_S0_DCM.xyz 3_S0_VAC.xyz 3_S1_DCM.xyz 3_S1_VAC.xyz 3_S2_DCM.xyz 3_S2_VAC.xyz 3_T1_DCM.xyz 3_T1_VAC.xyz 3_T2_DCM.xyz 3_T2_VAC.xyz 4_S0_DCM.xyz 4_S0_VAC.xyz 4_S1_DCM.xyz 4_S1_VAC.xyz 4_S2_DCM.xyz 4_S2_VAC.xyz 4_T1_DCM.xyz 4_T1_VAC.xyz 4_T2_DCM.xyz 4_T2_VAC.xyz

Zenodo (CERN European Organization for Nuclear Research)
Centre National de la Recherche Scientifique (FR), Délégation Bretagne et Pays de la Loire (FR)
Openalex Percentile: Top 23%
Advanced Chemical Physics Studies
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