Self-Supervised JEPA Pretraining for ECG Representations with Aligned Clinical Reports

Labeled electrocardiograms (ECG) are scarce, while unlabeled recordings are abundant. We pretrain a joint-embedding predictive architecture (JEPA) on unlabeled ECG segments by predicting the embeddings of masked leads and segments, and we align the resulting representations with clinical report text. We evaluate on a public 12-lead benchmark with a linear probe and a low-label regime, and on synthetic ECG with controlled anomalies. This is a research protocol, not a clinical tool. A synthetic pilot is too easy to discriminate, so the pretraining results are pending. Preprint. Results in this version come from small-scale pilot experiments; the full experimental protocol is described in the text and is pending.

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-11-02
DOI
https://doi.org/10.5281/zenodo.23890663
Primary Topic
ECG Monitoring and Analysis
Type
preprint
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preprint

Self-Supervised JEPA Pretraining for ECG Representations with Aligned Clinical Reports

Dheiver Francisco Santos
1 links
Zenodo (CERN European Organization for Nuclear Research)
ECG Monitoring and Analysis
preprint

Self-Supervised JEPA Pretraining for ECG Representations with Aligned Clinical Reports

Dheiver Francisco Santos
preprint en

Abstract

Labeled electrocardiograms (ECG) are scarce, while unlabeled recordings are abundant. We pretrain a joint-embedding predictive architecture (JEPA) on unlabeled ECG segments by predicting the embeddings of masked leads and segments, and we align the resulting representations with clinical report text. We evaluate on a public 12-lead benchmark with a linear probe and a low-label regime, and on synthetic ECG with controlled anomalies. This is a research protocol, not a clinical tool. A synthetic pilot is too easy to discriminate, so the pretraining results are pending. Preprint. Results in this version come from small-scale pilot experiments; the full experimental protocol is described in the text and is pending.

Zenodo (CERN European Organization for Nuclear Research)
Good health and well-being
ECG Monitoring and Analysis
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