Employing deep learning for chum salmon (Oncorhynchus keta) age estimation through scale image analysis

Accurate age estimates of salmon produced from scale growth patterns yield demographic information essential for population assessment and fisheries management. Conventionally, salmon ages are estimated from scales by trained personnel where demand often exceeds staffing capacity and financial resources. Convolutional neural network (CNN) models are a promising approach to augment manual age estimation. We compiled an extensive scale image repository from chum salmon (Oncorhynchus keta, Salmonidae) stocks throughout the North Pacific rim, evaluated two image preprocessing algorithms—Segment Anything Model (SAM) and You Only Look Once (YOLO)—to remove or reduce background noise, and trained an ensemble of three CNN models (EfficientNetV2L, NASNetLarge, and ConvNeXtLarge, weighted by their MSE) to infer chum salmon age. Agreement with expert estimates was higher for the SAM preprocessed images (93.2%) than YOLO (91.4%) across all major age classes (ages 3–5). Both preprocessing approaches showed reduced agreement for less common age classes because of inadequate representation in the model training and validation datasets. This approach may be integrated into fisheries management workflows to accelerate the age estimation process, complement manual reading, and bolster quality control protocols.

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Publication Details

Journal
Canadian Journal of Fisheries and Aquatic Sciences
Published
2026-11-02
DOI
https://doi.org/10.1139/cjfas-2026-0089
Primary Topic
Advanced Neural Network Applications
Type
article
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article

Employing deep learning for chum salmon (Oncorhynchus keta) age estimation through scale image analysis

Jordan T. Watson, Stephen G. Wischniowski, Benjamin H. Adams, Niels Leuthold et al.
2 links
Canadian Journal of Fisheries and Aquatic Sciences
Advanced Neural Network Applications
article

Employing deep learning for chum salmon (Oncorhynchus keta) age estimation through scale image analysis

Jordan T. Watson, Stephen G. Wischniowski, Benjamin H. Adams, Niels Leuthold, Patrick D. Barry, Robert T. Ames, Emma I. Christman, Matt W. Callahan, Taylor Scott, Sarah Gravel, Jodi C. Neil
article en

Abstract

Accurate age estimates of salmon produced from scale growth patterns yield demographic information essential for population assessment and fisheries management. Conventionally, salmon ages are estimated from scales by trained personnel where demand often exceeds staffing capacity and financial resources. Convolutional neural network (CNN) models are a promising approach to augment manual age estimation. We compiled an extensive scale image repository from chum salmon (Oncorhynchus keta, Salmonidae) stocks throughout the North Pacific rim, evaluated two image preprocessing algorithms—Segment Anything Model (SAM) and You Only Look Once (YOLO)—to remove or reduce background noise, and trained an ensemble of three CNN models (EfficientNetV2L, NASNetLarge, and ConvNeXtLarge, weighted by their MSE) to infer chum salmon age. Agreement with expert estimates was higher for the SAM preprocessed images (93.2%) than YOLO (91.4%) across all major age classes (ages 3–5). Both preprocessing approaches showed reduced agreement for less common age classes because of inadequate representation in the model training and validation datasets. This approach may be integrated into fisheries management workflows to accelerate the age estimation process, complement manual reading, and bolster quality control protocols.

Canadian Journal of Fisheries and Aquatic Sciences
Alaska Department of Fish and Game (US), Fisheries and Oceans Canada (CA), University of Washington (US), NOAA National Marine Fisheries Service Alaska Fisheries Science Center (US), Pacific States Marine Fisheries Commission (US), Canadian Integrated Ocean Observing System, Pacific Region (CA)
Life below water
Openalex Percentile: Top 20%
Advanced Neural Network Applications
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