Materials Property Prediction with a Site-Resolved Three-Dimensional Voxel Convolution Neural Network

Identifying low-energy atomic arrangements is central to the design of multicomponent materials such as high-entropy cathodes and perovskites, but the number of possible arrangements grows combinatorially with the number of elements. Calculating each arrangement with density functional theory (DFT) is impractical, and many machine-learning models require relaxed structures that become available only after such calculations. This study presents a site-resolved voxel three-dimensional convolutional neural network (SiVox) that maps each crystallographic site of a known prototype onto a voxel and encodes the occupying element by its physicochemical properties, so that only the site assignment is required as input. The model was evaluated on 1,287,000 configurations of high-entropy Li-rich layered oxides (HE-LLOs) and 18,928 cubic ABX3 perovskites. For HE-LLOs, it reached configurational R2 values of 0.989 for new configurations of training compositions and 0.993 for compositions excluded from training, compared with 0.92–0.93 for descriptor-based models. For perovskites, site assignment alone lowered the formation-energy MAE from 0.432 to 0.133 eV/cell relative to composition descriptors, and screening about 6% of the candidates recovered 90% of the lowest-energy 5%. Relaxed lattice parameters and atomic displacements reduced the error further and mattered most when the most stable of seven anion variants had to be identified. These results indicate that site assignment on a known framework is sufficient to narrow a large candidate space before structural relaxation.

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Publication Details

Journal
ChemRxiv
Published
2026-11-02
DOI
https://doi.org/10.26434/chemrxiv.15011524/v1
Primary Topic
Machine Learning in Materials Science
Type
preprint
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preprint

Materials Property Prediction with a Site-Resolved Three-Dimensional Voxel Convolution Neural Network

Juo Kim, Kyoungmin Min
1 links
ChemRxiv
Machine Learning in Materials Science
preprint

Materials Property Prediction with a Site-Resolved Three-Dimensional Voxel Convolution Neural Network

Juo Kim, Kyoungmin Min
preprint en

Abstract

Identifying low-energy atomic arrangements is central to the design of multicomponent materials such as high-entropy cathodes and perovskites, but the number of possible arrangements grows combinatorially with the number of elements. Calculating each arrangement with density functional theory (DFT) is impractical, and many machine-learning models require relaxed structures that become available only after such calculations. This study presents a site-resolved voxel three-dimensional convolutional neural network (SiVox) that maps each crystallographic site of a known prototype onto a voxel and encodes the occupying element by its physicochemical properties, so that only the site assignment is required as input. The model was evaluated on 1,287,000 configurations of high-entropy Li-rich layered oxides (HE-LLOs) and 18,928 cubic ABX3 perovskites. For HE-LLOs, it reached configurational R2 values of 0.989 for new configurations of training compositions and 0.993 for compositions excluded from training, compared with 0.92–0.93 for descriptor-based models. For perovskites, site assignment alone lowered the formation-energy MAE from 0.432 to 0.133 eV/cell relative to composition descriptors, and screening about 6% of the candidates recovered 90% of the lowest-energy 5%. Relaxed lattice parameters and atomic displacements reduced the error further and mattered most when the most stable of seven anion variants had to be identified. These results indicate that site assignment on a known framework is sufficient to narrow a large candidate space before structural relaxation.

ChemRxiv
Machine Learning in Materials Science
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Materials Property Prediction with a Site-Resolved Three-Dimensional Voxel Convolution Neural Network — Juo Kim, Kyoungmin Min · ChemRxiv (2026) | TGRS Research Map | TGRS