Two Pre-Registered Ablation Studies on Hippocampal-Inspired Memory for Dynamical Time Series

This deposit contains two connected but independent artifacts, both produced under the same pre-registration protocol, both evaluated with the same ablation-first methodology, and both reported with the same reference-free philosophy. Part I — PDNC (Perceptual-Dynamical Neural Compression). PDNC is a structured memory layer for dynamical time series. The deposit reports a pre-registered ablation of its hippocampal-inspired motifs against strong baselines (Hankel-DMD, bidirectional AR, echo-state networks, method of analogues, and spline interpolation) on gap-reconstruction and regime-retrieval tasks. The central hypothesis of the v7 plan — that a phase law combined with budgeted memory and a calibrated router would beat the baselines at gap reconstruction — was not supported: PHASE was worse than Hankel-DMD by +0.18 NMSE (95% CI [+0.12, +0.24], p = 0.002, 10 seeds), and the effect held in every gap × noise cell. The earlier v6.1 result in favour of PHASE was against a weaker baseline (method of analogues) and does not survive the stronger comparison. Supported findings are: salience-based memory consolidation (SSU) improves capacity-limited recall over FIFO and random eviction (v6.1: +5.4 to +7.6 points, p ≤ 0.016; v7: same direction, not significant after Holm correction); a multi-channel CA1 comparator outperforms any single channel (v6.1: +10 to +17 points); and stage-wise confidence certificates do not compose into an end-to-end guarantee (v6.1: 13% observed error at a 10% target; v7: end-to-end calibration meets the target in 9 of 10 seeds, at low coverage). Informative negative findings are: pattern separation (DG) helps only in a capacity-limited Hebbian associative memory and hurts a modern Hopfield memory by 17–24 points; the geodesic anchor (AIK), persistent homology (TOPO), and Creative Jump provide no measurable benefit on these tasks. Part II — CTMM (Certified Topological Memory Model). CTMM is the structured memory circuit from which the PDNC memory layer was extracted. The deposit reports the v6.1 eight-seed ablation of its components — encoder views, phase evolution, the CA1 comparator, salience-based consolidation (SSU), and an online cascade controller (CTC v2) — against nearest-neighbour baselines on simulated dynamical systems. The supported findings are the same three listed above (SSU, the multi-channel CA1 comparator, and the non-composition of stage-wise certificates), together with the observation that the CTC cascade reaches 87% of full-circuit accuracy at 9% of its cost. The negative findings are the same as in Part I: DG, AIK, TOPO, LSC compression, and Creative Jump do not survive the ablation. CTMM does not claim state-of-the-art reconstruction, and it does not claim a certified per-cycle fingerprint; the certificate it reports is the end-to-end selective-answering guarantee of CTC v2, evaluated on simulated data, with explicit failure modes and an identified confound in the pilot pre-checks. Relationship between the two parts. PDNC and CTMM are not two versions of one system. They are two artifacts that share a pre-registration protocol, an ablation-first methodology, and a reference-free evaluation philosophy. PDNC isolates the memory layer and tests it against strong time-series baselines. CTMM tests the full circuit from which that layer was extracted. Neither part claims a state-of-the-art result. The deposit is made for timestamping and provenance; a revised and merged version will follow in a later release, and the two parts are intended for separate submission to venues that accept rigorous empirical and negative results (TMLR, Neural Networks, Neurocomputing).

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-10-31
DOI
https://doi.org/10.5281/zenodo.23835109
Primary Topic
Model Reduction and Neural Networks
Type
preprint
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preprint

Two Pre-Registered Ablation Studies on Hippocampal-Inspired Memory for Dynamical Time Series

Ali Pazoky
Zenodo (CERN European Organization for Nuclear Research)
Model Reduction and Neural Networks
preprint

Two Pre-Registered Ablation Studies on Hippocampal-Inspired Memory for Dynamical Time Series

Ali Pazoky
preprint en

Abstract

This deposit contains two connected but independent artifacts, both produced under the same pre-registration protocol, both evaluated with the same ablation-first methodology, and both reported with the same reference-free philosophy. Part I — PDNC (Perceptual-Dynamical Neural Compression). PDNC is a structured memory layer for dynamical time series. The deposit reports a pre-registered ablation of its hippocampal-inspired motifs against strong baselines (Hankel-DMD, bidirectional AR, echo-state networks, method of analogues, and spline interpolation) on gap-reconstruction and regime-retrieval tasks. The central hypothesis of the v7 plan — that a phase law combined with budgeted memory and a calibrated router would beat the baselines at gap reconstruction — was not supported: PHASE was worse than Hankel-DMD by +0.18 NMSE (95% CI [+0.12, +0.24], p = 0.002, 10 seeds), and the effect held in every gap × noise cell. The earlier v6.1 result in favour of PHASE was against a weaker baseline (method of analogues) and does not survive the stronger comparison. Supported findings are: salience-based memory consolidation (SSU) improves capacity-limited recall over FIFO and random eviction (v6.1: +5.4 to +7.6 points, p ≤ 0.016; v7: same direction, not significant after Holm correction); a multi-channel CA1 comparator outperforms any single channel (v6.1: +10 to +17 points); and stage-wise confidence certificates do not compose into an end-to-end guarantee (v6.1: 13% observed error at a 10% target; v7: end-to-end calibration meets the target in 9 of 10 seeds, at low coverage). Informative negative findings are: pattern separation (DG) helps only in a capacity-limited Hebbian associative memory and hurts a modern Hopfield memory by 17–24 points; the geodesic anchor (AIK), persistent homology (TOPO), and Creative Jump provide no measurable benefit on these tasks. Part II — CTMM (Certified Topological Memory Model). CTMM is the structured memory circuit from which the PDNC memory layer was extracted. The deposit reports the v6.1 eight-seed ablation of its components — encoder views, phase evolution, the CA1 comparator, salience-based consolidation (SSU), and an online cascade controller (CTC v2) — against nearest-neighbour baselines on simulated dynamical systems. The supported findings are the same three listed above (SSU, the multi-channel CA1 comparator, and the non-composition of stage-wise certificates), together with the observation that the CTC cascade reaches 87% of full-circuit accuracy at 9% of its cost. The negative findings are the same as in Part I: DG, AIK, TOPO, LSC compression, and Creative Jump do not survive the ablation. CTMM does not claim state-of-the-art reconstruction, and it does not claim a certified per-cycle fingerprint; the certificate it reports is the end-to-end selective-answering guarantee of CTC v2, evaluated on simulated data, with explicit failure modes and an identified confound in the pilot pre-checks. Relationship between the two parts. PDNC and CTMM are not two versions of one system. They are two artifacts that share a pre-registration protocol, an ablation-first methodology, and a reference-free evaluation philosophy. PDNC isolates the memory layer and tests it against strong time-series baselines. CTMM tests the full circuit from which that layer was extracted. Neither part claims a state-of-the-art result. The deposit is made for timestamping and provenance; a revised and merged version will follow in a later release, and the two parts are intended for separate submission to venues that accept rigorous empirical and negative results (TMLR, Neural Networks, Neurocomputing).

Zenodo (CERN European Organization for Nuclear Research)
Model Reduction and Neural Networks
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