Extreme Slowdown of dsDNA and RNA:DNA Hybrids in Solid-state Nanopores for LiCl concentrations above 4 mol/L
Solid-state nanopores enable single-molecule detection and characterization through ionic-current measurements, but rapid translocation can limit the resolution of molecular features. Here, we investigated the translocation of 7.2 kb dsDNA and 3.3 kb RNA:DNA hybrids at LiCl concentrations extending to 7 mol/L. Both constructs exhibited a substantial increase of ≳ 500% in mean translocation time when increasing LiCl concentration from 2--3 M to 7 M . We also observed a decrease in translocation frequency at increasing LiCl concentration. Both observations indicate a reduction in the effective electric driving force. Further analysis indicates a substantial decrease in the relative width of secondary peaks induced by labels on the molecule. Our results show that increasing salt concentration beyond 4 mol/L is an accessible way for increasing translocation time in solid-state nanopore sensing, with possible implications for barcode sensing resolution.
Authors
- Ulrich F. Keyser (ORCID: https://orcid.org/0000-0003-3188-5414)
- Simon Brauburger (ORCID: https://orcid.org/0009-0007-8232-6336)
- Yunkai Wu
Institutions
- University of Cambridge (GB)
Publication Details
- Journal
- bioRxiv (Cold Spring Harbor Laboratory)
- Published
- 2026-10-30
- DOI
- https://doi.org/10.64898/2026.10.28.762501
- Primary Topic
- Nanopore and Nanochannel Transport Studies
- Type
- preprint
Funders
- UK Research and Innovation
- HORIZON EUROPE Framework Programme