Antimicrobial Potential of A Theobromine-Based Hydrazone Derivative Against Acinetobacter baumannii : In Vitro and In Silico Investigation

Background: Nosocomial Acinetobacter baumannii infections in immunocompromised cancer patients represent an urgent challenge, and drug repositioning of established pharmacological scaffolds offers an efficient strategy to address this burden. T-1-NBHPA [2-(3,7-dimethyl-2,6-dioxo-2,3,6,7-tetrahydro-1H-purin-1-yl)-N-(3-(1-(2-(4-nitrobenzoyl)hydrazono)ethyl)phenyl)acetamide] was previously identified as a potent anticancer VEGFR-2 inhibitor with sub-micromolar activity against HepG2 and MCF-7 cell lines. Objectives: This study aimed to investigate, for the first time, the antibacterial and antibiofilm activities of T-1-NBHPA against four A. baumannii strains and to elucidate its potential mechanism of antibiofilm action through molecular docking and molecular dynamics (MD) simulation targeting the biofilm master regulator BfmR. Methods: Antibacterial activity was assessed by agar well diffusion and broth microdilution against A. baumannii J26, Au299, 339, and S10 (colistin as reference). Antibiofilm activity was evaluated at 0.5×MIC by crystal violet staining and confirmed by scanning electron microscopy (SEM). Time-kill kinetics were conducted against A. baumannii Au299 over 24 h at MIC, 2×MIC, and 4×MIC, and a checkerboard assay assessed the interaction between T-1-NBHPA and ceftriaxone. Molecular docking and a 300×ns MD simulation against the AlphaFold-predicted BfmR structure were performed to explore the compound's binding mode. Results: T-1-NBHPA exhibited inhibition zone diameters of 11–22 mm and MIC values of 64–256 µg/mL across all tested strains. At 0.5×MIC, biofilm inhibition ranged from 33.75±1.1% to 52.65–3.0%, and SEM confirmed extensive disruption of biofilm ultrastructure. Time-kill analysis demonstrated concentration-dependent bactericidal activity, with complete growth elimination at 2× and 4×MIC within 24 h. The checkerboard assay showed a synergistic interaction with ceftriaxone (FICi = 0.375), with eight- and four-fold decreases in MIC values for ceftriaxone and T-1-NBHPA, respectively. Molecular docking predicted a binding affinity of ΔG = -8.0 kcal/mol against BfmR, and a 300-ns MD simulation supported the stability of the predicted complex. Conclusion: T-1-NBHPA demonstrates antibacterial and potent antibiofilm activity against A. baumannii, including a biofilm-disruption-mediated synergy with ceftriaxone, with computational data providing a plausible, though not yet experimentally confirmed, BfmR-mediated mechanistic hypothesis. Combined with its previously reported anticancer activity, these findings position T-1-NBHPA as a promising dualactivity theobromine scaffold warranting further mechanistic and in vivo validation, particularly for oncology patients at heightened risk of nosocomial A. baumannii infection.

Authors

Institutions

Publication Details

Journal
Journal of Computational Biophysics and Chemistry
Published
2026-10-30
DOI
https://doi.org/10.1142/s2737416527500062
Primary Topic
Bacterial biofilms and quorum sensing
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Antimicrobial Potential of A Theobromine-Based Hydrazone Derivative Against Acinetobacter baumannii : In Vitro and In Silico Investigation

Ibrahim H. Eissa, Aisha A. Alsfouk, Hazem Elkady, Mohammed S. Abdulrahman et al.
1 links
Journal of Computational Biophysics and Chemistry
Bacterial biofilms and quorum sensing
article

Antimicrobial Potential of A Theobromine-Based Hydrazone Derivative Against Acinetobacter baumannii : In Vitro and In Silico Investigation

Ibrahim H. Eissa, Aisha A. Alsfouk, Hazem Elkady, Mohammed S. Abdulrahman, Eslam B. Elkaeed, Mahmoud Sallam, Ahmed M. Metwaly, Mahmoud S. Elkotamy
article en

Abstract

Background: Nosocomial Acinetobacter baumannii infections in immunocompromised cancer patients represent an urgent challenge, and drug repositioning of established pharmacological scaffolds offers an efficient strategy to address this burden. T-1-NBHPA [2-(3,7-dimethyl-2,6-dioxo-2,3,6,7-tetrahydro-1H-purin-1-yl)-N-(3-(1-(2-(4-nitrobenzoyl)hydrazono)ethyl)phenyl)acetamide] was previously identified as a potent anticancer VEGFR-2 inhibitor with sub-micromolar activity against HepG2 and MCF-7 cell lines. Objectives: This study aimed to investigate, for the first time, the antibacterial and antibiofilm activities of T-1-NBHPA against four A. baumannii strains and to elucidate its potential mechanism of antibiofilm action through molecular docking and molecular dynamics (MD) simulation targeting the biofilm master regulator BfmR. Methods: Antibacterial activity was assessed by agar well diffusion and broth microdilution against A. baumannii J26, Au299, 339, and S10 (colistin as reference). Antibiofilm activity was evaluated at 0.5×MIC by crystal violet staining and confirmed by scanning electron microscopy (SEM). Time-kill kinetics were conducted against A. baumannii Au299 over 24 h at MIC, 2×MIC, and 4×MIC, and a checkerboard assay assessed the interaction between T-1-NBHPA and ceftriaxone. Molecular docking and a 300×ns MD simulation against the AlphaFold-predicted BfmR structure were performed to explore the compound's binding mode. Results: T-1-NBHPA exhibited inhibition zone diameters of 11–22 mm and MIC values of 64–256 µg/mL across all tested strains. At 0.5×MIC, biofilm inhibition ranged from 33.75±1.1% to 52.65–3.0%, and SEM confirmed extensive disruption of biofilm ultrastructure. Time-kill analysis demonstrated concentration-dependent bactericidal activity, with complete growth elimination at 2× and 4×MIC within 24 h. The checkerboard assay showed a synergistic interaction with ceftriaxone (FICi = 0.375), with eight- and four-fold decreases in MIC values for ceftriaxone and T-1-NBHPA, respectively. Molecular docking predicted a binding affinity of ΔG = -8.0 kcal/mol against BfmR, and a 300-ns MD simulation supported the stability of the predicted complex. Conclusion: T-1-NBHPA demonstrates antibacterial and potent antibiofilm activity against A. baumannii, including a biofilm-disruption-mediated synergy with ceftriaxone, with computational data providing a plausible, though not yet experimentally confirmed, BfmR-mediated mechanistic hypothesis. Combined with its previously reported anticancer activity, these findings position T-1-NBHPA as a promising dualactivity theobromine scaffold warranting further mechanistic and in vivo validation, particularly for oncology patients at heightened risk of nosocomial A. baumannii infection.

Journal of Computational Biophysics and Chemistry
Twitter (United States) (US)
Good health and well-being
Openalex Percentile: Top 22%
Bacterial biofilms and quorum sensing
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Laika access coming soon