Uncertainty-aware Coarse-to-Fine Main Pancreatic Duct Segmentation for Width Measurement in 3D MRCP

Assessment of the main pancreatic duct (MPD) from volumetric magnetic resonance cholangiopancreatography (MRCP) scans is an essential task for ductal dilatation diagnosis and pancreatic cancer analysis. However, manual assessment is affected by reader variability in which automated analysis may assist. Nevertheless, fully automated and uncertainty-aware MPD analysis from volumetric MRCP remains underexplored area of research. In this study, we propose an automatic and uncertainty-aware deep learning-based pipeline for MPD segmentation and maximum-width analysis from MRCP scans. A coarse localisation model first identifies the ductal region-of-interest, followed by a fine model that segments the MPD within the region. The dataset consists of 256 MPD-segmented MRCP scans from 69 patients. A randomly selected holdout test subset of 14 patients with 55 MRCP volumes was used for evaluation. We employed a five-model cross-validation ensemble for improved performance and uncertainty estimation. The best MPD segmentation performance was 0.634 DSC, 0.744 precision, and 0.593 recall. The mean absolute error for maximum MPD width prediction was 0.355~mm and dilated MPD ($\geq 5$~mm) was detected with 75.0\% sensitivity and 74.4\% specificity. These novel results suggest that automated MPD segmentation can be used to aid MRCP-based duct measurements.

Authors

Publication Details

Journal
arXiv (Cornell University)
Published
2026-10-29
DOI
https://doi.org/10.48550/arxiv.2610.40073
Primary Topic
Medical Image Segmentation Techniques
Type
preprint
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preprint

Uncertainty-aware Coarse-to-Fine Main Pancreatic Duct Segmentation for Width Measurement in 3D MRCP

Jaakko Sahlsten, Zipei Zhang, Kimmo K. Kaski, Johanna Ronkainen et al.
arXiv (Cornell University)
Medical Image Segmentation Techniques
preprint

Uncertainty-aware Coarse-to-Fine Main Pancreatic Duct Segmentation for Width Measurement in 3D MRCP

Jaakko Sahlsten, Zipei Zhang, Kimmo K. Kaski, Johanna Ronkainen, Mikko Saukkoriipi, Akseli Aittoniemi, Mona Lehto, Irina Rinta-Kiikka
preprint en

Abstract

Assessment of the main pancreatic duct (MPD) from volumetric magnetic resonance cholangiopancreatography (MRCP) scans is an essential task for ductal dilatation diagnosis and pancreatic cancer analysis. However, manual assessment is affected by reader variability in which automated analysis may assist. Nevertheless, fully automated and uncertainty-aware MPD analysis from volumetric MRCP remains underexplored area of research. In this study, we propose an automatic and uncertainty-aware deep learning-based pipeline for MPD segmentation and maximum-width analysis from MRCP scans. A coarse localisation model first identifies the ductal region-of-interest, followed by a fine model that segments the MPD within the region. The dataset consists of 256 MPD-segmented MRCP scans from 69 patients. A randomly selected holdout test subset of 14 patients with 55 MRCP volumes was used for evaluation. We employed a five-model cross-validation ensemble for improved performance and uncertainty estimation. The best MPD segmentation performance was 0.634 DSC, 0.744 precision, and 0.593 recall. The mean absolute error for maximum MPD width prediction was 0.355~mm and dilated MPD ($\geq 5$~mm) was detected with 75.0\% sensitivity and 74.4\% specificity. These novel results suggest that automated MPD segmentation can be used to aid MRCP-based duct measurements.

arXiv (Cornell University)
Medical Image Segmentation Techniques
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Uncertainty-aware Coarse-to-Fine Main Pancreatic Duct Segmentation for Width Measurement in 3D MRCP — Jaakko Sahlsten, Zipei Zhang, et al. · arXiv (Cornell University) (2026) | TGRS Research Map | TGRS