Mass spectrometric detection of protein nanoclusters: the invisible intermediates of phase separation

Phase separation of biomolecules, including intrinsically disordered proteins, is an underlying physical process behind cellular condensate formation. To increase mechanistic understanding of its initial stages, we demonstrate the application of charge detection mass spectrometry to characterise the mass dispersion of protein nanoclusters that represent intermediates in this important biophysical process. We detect polydisperse clusters of 1-280 protein molecules (64 kDa-18.4 MDa), that are currently invisible to most analytical techniques.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-10-30
DOI
https://doi.org/10.64898/2026.10.28.762497
Primary Topic
Mass Spectrometry Techniques and Applications
Type
preprint

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preprint

Mass spectrometric detection of protein nanoclusters: the invisible intermediates of phase separation

Thuy Phuong Dao, Carlos A. Castañeda, Christina Glen Robb, Jakub Ujma et al.
1 links
bioRxiv (Cold Spring Harbor Laboratory)
Mass Spectrometry Techniques and Applications
preprint

Mass spectrometric detection of protein nanoclusters: the invisible intermediates of phase separation

Thuy Phuong Dao, Carlos A. Castañeda, Christina Glen Robb, Jakub Ujma, Rebecca Beveridge, Anisha Haris
preprint en

Abstract

Phase separation of biomolecules, including intrinsically disordered proteins, is an underlying physical process behind cellular condensate formation. To increase mechanistic understanding of its initial stages, we demonstrate the application of charge detection mass spectrometry to characterise the mass dispersion of protein nanoclusters that represent intermediates in this important biophysical process. We detect polydisperse clusters of 1-280 protein molecules (64 kDa-18.4 MDa), that are currently invisible to most analytical techniques.

bioRxiv (Cold Spring Harbor Laboratory)
Waters (United States) (US), University of Strathclyde (GB), Syracuse University (US)
UK Research and Innovation, Leverhulme Trust, National Institutes of Health
Mass Spectrometry Techniques and Applications
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