Subzero‐Temperature NMR Observation of Protein Dynamics and Ligand Binding Enabled by Encapsulation Within Coordination Cages

Lowering temperatures provides an effective strategy for probing rapid protein dynamics. However, conventional nuclear magnetic resonance (NMR) measurements are usually limited to temperatures above 0°C due to water freezing and increasing rotational correlation times. In this study, we report subzero-temperature NMR analysis enabled by encapsulating a protein within spherical coordination cages. Spatial confinement within the metallo-cages stabilizes proteins by preventing aggregation, enabling multi-dimensional NMR measurements of a 20 kDa protein at temperatures as low as -30°C in low-viscosity acetone-water mixtures. Below 0°C, the NMR spectra of the protein revealed markedly slowed dynamics, resolving two distinct conformations as split signals. Furthermore, the subzero-temperature analysis enabled detection of exchangeable hydroxy protons that are unobservable at ambient temperatures. Saturation transfer difference (STD) NMR revealed binding of carbohydrate hydroxy groups to lysozyme, owing to the large apertures of the cages, which permit ligand diffusion while the cages stabilize proteins under subzero conditions. This cage confinement thus facilitates the study of rapid protein dynamics and ligand binding beyond the limits of conventional solution NMR.

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Publication Details

Journal
Chemistry - An Asian Journal
Published
2026-10-29
DOI
https://doi.org/10.1002/asia.71029
Primary Topic
Advanced NMR Techniques and Applications
Type
article
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article

Subzero‐Temperature NMR Observation of Protein Dynamics and Ligand Binding Enabled by Encapsulation Within Coordination Cages

Makoto Fujita, Miri Tadokoro, Risa Ebihara, Maho Yagi‐Utsumi et al.
Chemistry - An Asian Journal
Advanced NMR Techniques and Applications
article

Subzero‐Temperature NMR Observation of Protein Dynamics and Ligand Binding Enabled by Encapsulation Within Coordination Cages

Makoto Fujita, Miri Tadokoro, Risa Ebihara, Maho Yagi‐Utsumi, Koichi Kato, Takahiro Nakama
article en

Abstract

Lowering temperatures provides an effective strategy for probing rapid protein dynamics. However, conventional nuclear magnetic resonance (NMR) measurements are usually limited to temperatures above 0°C due to water freezing and increasing rotational correlation times. In this study, we report subzero-temperature NMR analysis enabled by encapsulating a protein within spherical coordination cages. Spatial confinement within the metallo-cages stabilizes proteins by preventing aggregation, enabling multi-dimensional NMR measurements of a 20 kDa protein at temperatures as low as -30°C in low-viscosity acetone-water mixtures. Below 0°C, the NMR spectra of the protein revealed markedly slowed dynamics, resolving two distinct conformations as split signals. Furthermore, the subzero-temperature analysis enabled detection of exchangeable hydroxy protons that are unobservable at ambient temperatures. Saturation transfer difference (STD) NMR revealed binding of carbohydrate hydroxy groups to lysozyme, owing to the large apertures of the cages, which permit ligand diffusion while the cages stabilize proteins under subzero conditions. This cage confinement thus facilitates the study of rapid protein dynamics and ligand binding beyond the limits of conventional solution NMR.

Chemistry - An Asian JournalVol. 21(21)
Nagoya City University (JP), Institute for Molecular Science (JP), The Exploratory Research Center on Life and Living Systems (JP), Tokyo College, The University of Tokyo (JP), The University of Tokyo Institutes for Advanced Study (JP), The University of Tokyo (JP)
Openalex Percentile: Top 27%
Advanced NMR Techniques and Applications
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