Phyllostomid bats across habitat categories in artisanal and small-scale gold mining concessions, Madre de Dios, Peru

Companion data and R code for the manuscript: "Similar observed richness, different assemblages: phyllostomid bats across habitats within artisanal and small-scale gold mining landscapes of the Peruvian Amazon" The repository contains the field data and the full analysis pipeline used to compare phyllostomid bat richness and assemblage composition among habitat categories within artisanal and small-scale gold mining (ASGM) concessions in Madre de Dios, Peru. All tables, figures and supplementary tables of the manuscript can be reproduced from these files. Sampling: [month/year – month/year]; [method, e.g., mist nets, number of sites and sampling effort]. CONTENTS- data_raw/: original field files as exported, before correction.- data/: corrected files used in all analyses (rebuilt from data_raw/ with scripts/01_fix_data.R).- scripts/: numbered R scripts; run 00_run_all.R to execute the full pipeline.- outputs/: model logs, result tables (CSV), run_all_console.txt and sessionInfo.txt.- outputs/supplementary/: Supplementary Tables S1–S11 (CSV and Markdown).- figures/: Fig. 1 (study area), Figs. 2–5, S1 and S2 (PNG, 600 dpi, and PDF).- supplementary material/: supplementary material (.docx).