Medical Fine-Tuning Changes Answer Commitment and Information Flow in a Vision-Language Model: A Split-Sample Study on VQA-RAD

Overview Medical fine-tuning changes how vision-language models use an image, but it is unclear whether it makes them rely less on the question text. We measure this with per-layer attention knockout, which blocks image-to-answer or question-to-answer attention one layer at a time. Setup The probe is applied as a pre-specified before/after instrument to Gemma-3-4B and its medical fine-tune MedGemma-4B on the VQA-RAD radiology benchmark (250 samples: discovery 0000 to 0099, confirmation 0100 to 0249). Main Result On the confirmation split, the pre-specified primary test holds: the median per-sample question-dominance ratio falls from 5.36 to 4.15 (p=0.006, Cliff’s δ = 0.18), a small effect relative to the model’s language prior. Discovery Candidates Four of five discovery candidates replicate (one only at the raw level). They show: a more decisive first answer token smaller closed yes/no logit margins lower image-to-answer information flow (IF AUC, replicated at the raw level only) A discovery-only “image enters later” shift does not replicate and is reported as a null. Accuracy Closed-ended accuracy is higher for the medical model (77.2% vs. 44.3%, p=3.9x10^-5; both are forced-choice logit verdicts, not generated answers). However, the base model sits at the always-“yes” rate, below the majority-class baseline, so part of this gap is a baseline effect. Encoder vs. Decoder The medical vision encoder differs sharply from the base (linear CKA 0.155). Whether the change lies in the encoder or the decoder is left open and is the subject of follow-up work.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-10-29
DOI
https://doi.org/10.5281/zenodo.23766103
Primary Topic
Multimodal Machine Learning Applications
Type
preprint
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preprint

Medical Fine-Tuning Changes Answer Commitment and Information Flow in a Vision-Language Model: A Split-Sample Study on VQA-RAD

Houssem Eddine Hajri
2 links
Zenodo (CERN European Organization for Nuclear Research)
Multimodal Machine Learning Applications
preprint

Medical Fine-Tuning Changes Answer Commitment and Information Flow in a Vision-Language Model: A Split-Sample Study on VQA-RAD

Houssem Eddine Hajri
preprint en

Abstract

Overview Medical fine-tuning changes how vision-language models use an image, but it is unclear whether it makes them rely less on the question text. We measure this with per-layer attention knockout, which blocks image-to-answer or question-to-answer attention one layer at a time. Setup The probe is applied as a pre-specified before/after instrument to Gemma-3-4B and its medical fine-tune MedGemma-4B on the VQA-RAD radiology benchmark (250 samples: discovery 0000 to 0099, confirmation 0100 to 0249). Main Result On the confirmation split, the pre-specified primary test holds: the median per-sample question-dominance ratio falls from 5.36 to 4.15 (p=0.006, Cliff’s δ = 0.18), a small effect relative to the model’s language prior. Discovery Candidates Four of five discovery candidates replicate (one only at the raw level). They show: a more decisive first answer token smaller closed yes/no logit margins lower image-to-answer information flow (IF AUC, replicated at the raw level only) A discovery-only “image enters later” shift does not replicate and is reported as a null. Accuracy Closed-ended accuracy is higher for the medical model (77.2% vs. 44.3%, p=3.9x10^-5; both are forced-choice logit verdicts, not generated answers). However, the base model sits at the always-“yes” rate, below the majority-class baseline, so part of this gap is a baseline effect. Encoder vs. Decoder The medical vision encoder differs sharply from the base (linear CKA 0.155). Whether the change lies in the encoder or the decoder is left open and is the subject of follow-up work.

Zenodo (CERN European Organization for Nuclear Research)
Multimodal Machine Learning Applications
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