Hybrid Machine Learning–Geostatistical Modeling of Soil Quality in Saline–Sodic Soils Under Arid Agroecosystems of Northwestern Peru

ABSTRACT Background Soil fertility management in mango and banana production systems in northern Peru is limited by marked spatial heterogeneity, driven by chemical imbalances, particularly salinity, alkalinity, and sodicity. Aim This study developed a spatial predictive framework to assess soil quality across the agricultural area of Morropón Province, Piura, by integrating a weighted soil‐quality index (SQIw), specifically designed to diagnose salinity‐, sodicity‐, and alkalinity‐related constraints, with hybrid machine learning–geostatistical modeling. Methods Soil sampling was carried out in homogeneous units delimited according to slope, texture, and soil color. Within each unit, subsamples were composed of the 0–30 cm layer, resulting in 1304 observations representative of mango and banana fields. The SQIw was constructed using laboratory‐derived physicochemical soil properties combined with environmental covariates, including vegetation indices extracted from Sentinel‐2 images in Google Earth Engine. A minimum data set was defined through transformation, collinearity screening, and principal component analysis. The variables were standardized, weighted according to their contribution to the explained variance, normalized using scoring functions, and linearly integrated to calculate the index, which was classified into five quality levels. Spatial prediction was performed using ordinary kriging (OK), random forest (RF), and a hybrid RF with residual kriging (RF + RK). In random cross‐validation, OK showed the lowest performance ( R 2 = 0.245; root mean square error [RMSE] = 0.155), whereas RF improved accuracy ( R 2 = 0.315; RMSE = 0.147), and RF + RK ( R 2 = 0.309; RMSE = 0.148) achieved comparable improvements. Results A reduced RF + RK model based on the most relevant predictors achieved the best numerical performance ( R 2 = 0.340; RMSE = 0.144), although it was not statistically different from the other RF‐based models. Conclusion The resulting map supports site‐specific fertility management in mango and banana production systems in northern Peru.

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Publication Details

Journal
Journal of Plant Nutrition and Soil Science
Published
2026-10-28
DOI
https://doi.org/10.1002/jpln.70133
Primary Topic
Soil Geostatistics and Mapping
Type
article
Field-Weighted Citation Impact
0.00

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article

Hybrid Machine Learning–Geostatistical Modeling of Soil Quality in Saline–Sodic Soils Under Arid Agroecosystems of Northwestern Peru

Gerson La Rosa, Sharon Mejía, Ruth Mercado, Kenyi R. Quispe et al.
4 links
Journal of Plant Nutrition and Soil Science
Soil Geostatistics and Mapping
article

Hybrid Machine Learning–Geostatistical Modeling of Soil Quality in Saline–Sodic Soils Under Arid Agroecosystems of Northwestern Peru

Gerson La Rosa, Sharon Mejía, Ruth Mercado, Kenyi R. Quispe, Sebastian Casas-Niño
article en

Abstract

ABSTRACT Background Soil fertility management in mango and banana production systems in northern Peru is limited by marked spatial heterogeneity, driven by chemical imbalances, particularly salinity, alkalinity, and sodicity. Aim This study developed a spatial predictive framework to assess soil quality across the agricultural area of Morropón Province, Piura, by integrating a weighted soil‐quality index (SQIw), specifically designed to diagnose salinity‐, sodicity‐, and alkalinity‐related constraints, with hybrid machine learning–geostatistical modeling. Methods Soil sampling was carried out in homogeneous units delimited according to slope, texture, and soil color. Within each unit, subsamples were composed of the 0–30 cm layer, resulting in 1304 observations representative of mango and banana fields. The SQIw was constructed using laboratory‐derived physicochemical soil properties combined with environmental covariates, including vegetation indices extracted from Sentinel‐2 images in Google Earth Engine. A minimum data set was defined through transformation, collinearity screening, and principal component analysis. The variables were standardized, weighted according to their contribution to the explained variance, normalized using scoring functions, and linearly integrated to calculate the index, which was classified into five quality levels. Spatial prediction was performed using ordinary kriging (OK), random forest (RF), and a hybrid RF with residual kriging (RF + RK). In random cross‐validation, OK showed the lowest performance ( R 2 = 0.245; root mean square error [RMSE] = 0.155), whereas RF improved accuracy ( R 2 = 0.315; RMSE = 0.147), and RF + RK ( R 2 = 0.309; RMSE = 0.148) achieved comparable improvements. Results A reduced RF + RK model based on the most relevant predictors achieved the best numerical performance ( R 2 = 0.340; RMSE = 0.144), although it was not statistically different from the other RF‐based models. Conclusion The resulting map supports site‐specific fertility management in mango and banana production systems in northern Peru.

Journal of Plant Nutrition and Soil Science
Instituto Nacional de Innovación Agraria (PE)
Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria
Zero hunger, Life on land
Openalex Percentile: Top 22%
Soil Geostatistics and Mapping
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