Csx15 is a broad specificity ring nuclease bridging CRISPR-Cas and CBASS cyclic nucleotide signaling systems
Prokaryotic antiviral type III CRISPR-Cas and CBASS systems use cyclic nucleotides as second messengers to activate diverse effector proteins. Whereas CBASS signaling typically triggers abortive infection, type III CRISPR-Cas signaling is tightly regulated through controlled signal production and degradation. Here, we define the molecular mechanism of the CRISPR-associated Csx15 protein family and demonstrate that Csx15 functions as a broad specificity ring nuclease capable of degrading cyclic nucleotide signals from both CRISPR-Cas and CBASS pathways. Structural and biochemical analyses reveal that Csx15 adopts diverse oligomeric states and undergoes ligand-induced conformational transitions that promote filament assembly required for catalytic activity, analogous to filament-forming SAVED-domain effectors. Finally, we provide evidence that Csx15 is a close relative of SAVED domains suggesting that Csx15-like proteins may have also contributed to the evolution of CBASS cyclic nucleotide signaling.
Authors
- Audronė Rukšėnaitė (ORCID: https://orcid.org/0000-0003-2744-486X)
- Giedrius Sasnauskas (ORCID: https://orcid.org/0000-0002-3185-2682)
- Giedrė Tamulaitienė (ORCID: https://orcid.org/0000-0002-9794-3544)
- Dalia Smalakytė (ORCID: https://orcid.org/0000-0002-6913-6884)
- Česlovas Venclovas (ORCID: https://orcid.org/0000-0002-4215-0213)
- Matthias Bochtler (ORCID: https://orcid.org/0000-0001-7884-4463)
- Dominik Rafalski (ORCID: https://orcid.org/0000-0002-3449-7460)
- Gintautas Tamulaitis (ORCID: https://orcid.org/0000-0002-2259-3033)
- Danas Klimavicius (ORCID: https://orcid.org/0009-0002-8427-1942)
Institutions
- Vilnius University (LT)
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences (PL)
- Polish Academy of Sciences (PL)
Publication Details
- Journal
- bioRxiv (Cold Spring Harbor Laboratory)
- Published
- 2026-10-28
- DOI
- https://doi.org/10.64898/2026.10.26.761840
- Primary Topic
- CRISPR and Genetic Engineering
- Type
- preprint
Funders
- European Commission
- Fundacja na rzecz Nauki Polskiej
- Lietuvos Mokslo Taryba
- Międzynarodowy Instytut Biologii Molekularnej i Komórkowej w Warszawie
- HORIZON EUROPE Framework Programme
- NextGenerationEU