Csx15 is a broad specificity ring nuclease bridging CRISPR-Cas and CBASS cyclic nucleotide signaling systems

Prokaryotic antiviral type III CRISPR-Cas and CBASS systems use cyclic nucleotides as second messengers to activate diverse effector proteins. Whereas CBASS signaling typically triggers abortive infection, type III CRISPR-Cas signaling is tightly regulated through controlled signal production and degradation. Here, we define the molecular mechanism of the CRISPR-associated Csx15 protein family and demonstrate that Csx15 functions as a broad specificity ring nuclease capable of degrading cyclic nucleotide signals from both CRISPR-Cas and CBASS pathways. Structural and biochemical analyses reveal that Csx15 adopts diverse oligomeric states and undergoes ligand-induced conformational transitions that promote filament assembly required for catalytic activity, analogous to filament-forming SAVED-domain effectors. Finally, we provide evidence that Csx15 is a close relative of SAVED domains suggesting that Csx15-like proteins may have also contributed to the evolution of CBASS cyclic nucleotide signaling.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-10-28
DOI
https://doi.org/10.64898/2026.10.26.761840
Primary Topic
CRISPR and Genetic Engineering
Type
preprint

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preprint

Csx15 is a broad specificity ring nuclease bridging CRISPR-Cas and CBASS cyclic nucleotide signaling systems

Audronė Rukšėnaitė, Giedrius Sasnauskas, Giedrė Tamulaitienė, Dalia Smalakytė et al.
1 links
bioRxiv (Cold Spring Harbor Laboratory)
CRISPR and Genetic Engineering
preprint

Csx15 is a broad specificity ring nuclease bridging CRISPR-Cas and CBASS cyclic nucleotide signaling systems

Audronė Rukšėnaitė, Giedrius Sasnauskas, Giedrė Tamulaitienė, Dalia Smalakytė, Česlovas Venclovas, Matthias Bochtler, Dominik Rafalski, Gintautas Tamulaitis, Danas Klimavicius
preprint en

Abstract

Prokaryotic antiviral type III CRISPR-Cas and CBASS systems use cyclic nucleotides as second messengers to activate diverse effector proteins. Whereas CBASS signaling typically triggers abortive infection, type III CRISPR-Cas signaling is tightly regulated through controlled signal production and degradation. Here, we define the molecular mechanism of the CRISPR-associated Csx15 protein family and demonstrate that Csx15 functions as a broad specificity ring nuclease capable of degrading cyclic nucleotide signals from both CRISPR-Cas and CBASS pathways. Structural and biochemical analyses reveal that Csx15 adopts diverse oligomeric states and undergoes ligand-induced conformational transitions that promote filament assembly required for catalytic activity, analogous to filament-forming SAVED-domain effectors. Finally, we provide evidence that Csx15 is a close relative of SAVED domains suggesting that Csx15-like proteins may have also contributed to the evolution of CBASS cyclic nucleotide signaling.

bioRxiv (Cold Spring Harbor Laboratory)
Vilnius University (LT), Institute of Biochemistry and Biophysics, Polish Academy of Sciences (PL), Polish Academy of Sciences (PL)
European Commission, Fundacja na rzecz Nauki Polskiej, Lietuvos Mokslo Taryba, Międzynarodowy Instytut Biologii Molekularnej i Komórkowej w Warszawie, HORIZON EUROPE Framework Programme, NextGenerationEU
CRISPR and Genetic Engineering
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