Role of allostery in ligand binding modulated mechanical responses of calmodulin domain

Abstract Calmodulin (CaM), a central Ca2+ sensor in eukaryotic cells, exhibits Ca2+-regulated conformational transitions that are strongly influenced by mechanical stress. Single-molecule experiments have revealed a nonmonotonic dependence of the unfolding transition-state distance δx‡ on Ca2+ concentration, yet the underlying microscopic mechanism remains elusive. Here, using a dynamic energy-landscape model combined with largescale coarse-grained molecular dynamics simulations, we elucidate how Ca2+ concentration and mechanical tension jointly shape the unfolding pathway of CaM domain. At low Ca2+ concentrations, the reduction in δx‡ arises from a redistribution within the folded ensemble between closed and open conformations. At moderate and high Ca2+ concentrations, the subsequent increase in δx‡ originates from substantial Ca2+-dependent modifications of the unfolding transition-state ensemble. Moreover, our simulations predict that mechanical tension enhances Ca2+-binding affinity, revealing a counterintuitive force-induced stabilization effect. Together, these findings provide a microscopic explanation for the experimentally observed tension-Ca2+ coupling and offer a unified physical framework for understanding the mechanosensitive functional regulation of CaM.

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Publication Details

Journal
Communications in Theoretical Physics
Published
2026-10-28
DOI
https://doi.org/10.1088/1572-9494/aeba85
Primary Topic
Protein Structure and Dynamics
Type
article
Field-Weighted Citation Impact
0.00

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article

Role of allostery in ligand binding modulated mechanical responses of calmodulin domain

Weitong Ren, Yunqiang Bian, Yajing Wang, Xiulian 秀莲 Xu 徐 et al.
Communications in Theoretical Physics
Protein Structure and Dynamics
article

Role of allostery in ligand binding modulated mechanical responses of calmodulin domain

Weitong Ren, Yunqiang Bian, Yajing Wang, Xiulian 秀莲 Xu 徐, Yichao Wu, Wei Wang
article en

Abstract

Abstract Calmodulin (CaM), a central Ca2+ sensor in eukaryotic cells, exhibits Ca2+-regulated conformational transitions that are strongly influenced by mechanical stress. Single-molecule experiments have revealed a nonmonotonic dependence of the unfolding transition-state distance δx‡ on Ca2+ concentration, yet the underlying microscopic mechanism remains elusive. Here, using a dynamic energy-landscape model combined with largescale coarse-grained molecular dynamics simulations, we elucidate how Ca2+ concentration and mechanical tension jointly shape the unfolding pathway of CaM domain. At low Ca2+ concentrations, the reduction in δx‡ arises from a redistribution within the folded ensemble between closed and open conformations. At moderate and high Ca2+ concentrations, the subsequent increase in δx‡ originates from substantial Ca2+-dependent modifications of the unfolding transition-state ensemble. Moreover, our simulations predict that mechanical tension enhances Ca2+-binding affinity, revealing a counterintuitive force-induced stabilization effect. Together, these findings provide a microscopic explanation for the experimentally observed tension-Ca2+ coupling and offer a unified physical framework for understanding the mechanosensitive functional regulation of CaM.

Communications in Theoretical Physics
Chinese Academy of Sciences (CN), University of Chinese Academy of Sciences (CN), Wenzhou Institute, University of Chinese Academy of Sciences (CN), Yangzhou University (CN), Nanjing University (CN)
National Natural Science Foundation of China, Chinese Academy of Sciences, Nanjing University, Basic Research Program of Jiangsu Province, Wenzhou Institute of Biomaterials and Engineering
Openalex Percentile: Top 22%
Protein Structure and Dynamics
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