Decision and System One models in rheumatology: accuracy and calibration on specialty-training examination questions and diagnostic case vignettes

Objective: To evaluate the accuracy and calibration of Decision and System One models on rheumatology examination questions and diagnostic vignettes. Methods: Two benchmarks were analysed: 172 text-based rheumatology questions from Spanish specialty-training examinations (expanded RheumaMIR dataset) in Spanish and English, and 70 English diagnostic vignettes from RheumBench, each with 5-18 candidate diagnoses, 52 of which included the correct reference diagnosis. Four System One models (i.e., Jev 1.13, Clef, Microsoft-Decision-1, Laya) and GPT-6 Luna, evaluated as a decision model through the OpenAI Decisions API, were compared with GPT-6 Sol, a frontier generative model, and two local generative models (Gemma 4 12B, Qwen3-8B). The primary outcome was accuracy, the proportion of questions or cases in which the selected option matched the answer key; secondary outcomes included calibration, discrimination, accuracy of answers with probability ≥0.90 and, in RheumaMIR, language differences. Results: In RheumaMIR, Jev’s accuracy was 93.0% in Spanish and 91.9% in English, below GPT-6 Sol (99.4% in both languages; Holm-adjusted P≤0.005); GPT-6 Luna reached 97.7% in both languages, Clef 91.9% and 93.0%, and Microsoft-Decision-1 87.8% and 86.0%, respectively, without detectable language differences. Jev’s answers with probability ≥0.90 (76% and 77% of answers) were 98.5% correct. In RheumBench, accuracy was lower for every model: GPT-6 Sol 76.9%, GPT-6 Luna 63.5%, Clef 59.6%, Jev 50.0% and Microsoft-Decision-1 40.4% (each System One model below GPT-6 Sol, Holm-adjusted P≤0.045), against 9.6% expected from random guessing. Jev, whose probabilities matched its accuracy in RheumaMIR (over/underconfidence index −0.015 and 0.000), became overconfident (mean probability 0.659; index +0.159), and its answers with probability ≥0.90 (25% of cases) were 84.6% correct, against 95.5% for GPT-6 Luna (42% of cases). Laya performed near chance in both benchmarks. Conclusion: The best-performing System One models achieved high accuracy on rheumatology examination questions, but their performance declined on diagnostic vignettes and remained below GPT-6 Sol. Jev’s high-confidence predictions were less reliable on diagnostic vignettes than on examination questions, highlighting the need for task-specific evaluation and improved calibration of diagnostic probabilities.

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Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-10-28
DOI
https://doi.org/10.5281/zenodo.23741215
Primary Topic
Artificial Intelligence in Healthcare and Education
Type
preprint
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preprint

Decision and System One models in rheumatology: accuracy and calibration on specialty-training examination questions and diagnostic case vignettes

Beatriz Merino‐Barbancho, Diego Benavent, Alfredo Madrid-García, Johannes Knitza et al.
5 links
Zenodo (CERN European Organization for Nuclear Research)
Artificial Intelligence in Healthcare and Education
preprint

Decision and System One models in rheumatology: accuracy and calibration on specialty-training examination questions and diagnostic case vignettes

Beatriz Merino‐Barbancho, Diego Benavent, Alfredo Madrid-García, Johannes Knitza, Phillip Kremer, Fabian Lechner
preprint en

Abstract

Objective: To evaluate the accuracy and calibration of Decision and System One models on rheumatology examination questions and diagnostic vignettes. Methods: Two benchmarks were analysed: 172 text-based rheumatology questions from Spanish specialty-training examinations (expanded RheumaMIR dataset) in Spanish and English, and 70 English diagnostic vignettes from RheumBench, each with 5-18 candidate diagnoses, 52 of which included the correct reference diagnosis. Four System One models (i.e., Jev 1.13, Clef, Microsoft-Decision-1, Laya) and GPT-6 Luna, evaluated as a decision model through the OpenAI Decisions API, were compared with GPT-6 Sol, a frontier generative model, and two local generative models (Gemma 4 12B, Qwen3-8B). The primary outcome was accuracy, the proportion of questions or cases in which the selected option matched the answer key; secondary outcomes included calibration, discrimination, accuracy of answers with probability ≥0.90 and, in RheumaMIR, language differences. Results: In RheumaMIR, Jev’s accuracy was 93.0% in Spanish and 91.9% in English, below GPT-6 Sol (99.4% in both languages; Holm-adjusted P≤0.005); GPT-6 Luna reached 97.7% in both languages, Clef 91.9% and 93.0%, and Microsoft-Decision-1 87.8% and 86.0%, respectively, without detectable language differences. Jev’s answers with probability ≥0.90 (76% and 77% of answers) were 98.5% correct. In RheumBench, accuracy was lower for every model: GPT-6 Sol 76.9%, GPT-6 Luna 63.5%, Clef 59.6%, Jev 50.0% and Microsoft-Decision-1 40.4% (each System One model below GPT-6 Sol, Holm-adjusted P≤0.045), against 9.6% expected from random guessing. Jev, whose probabilities matched its accuracy in RheumaMIR (over/underconfidence index −0.015 and 0.000), became overconfident (mean probability 0.659; index +0.159), and its answers with probability ≥0.90 (25% of cases) were 84.6% correct, against 95.5% for GPT-6 Luna (42% of cases). Laya performed near chance in both benchmarks. Conclusion: The best-performing System One models achieved high accuracy on rheumatology examination questions, but their performance declined on diagnostic vignettes and remained below GPT-6 Sol. Jev’s high-confidence predictions were less reliable on diagnostic vignettes than on examination questions, highlighting the need for task-specific evaluation and improved calibration of diagnostic probabilities.

Zenodo (CERN European Organization for Nuclear Research)
Philipps University of Marburg (DE), Bellvitge University Hospital (ES), Hospital Clínico San Carlos (ES), University Medical Center Hamburg-Eppendorf (DE), Roche (Spain) (ES)
Good health and well-being
Artificial Intelligence in Healthcare and Education
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