Nucleic Acid Aptamer-Based and Oligonucleotide Hybridization Biosensors for the Detection of Helicobacter pylori: Recent Advances, Transduction Mechanisms and Point-of-Care Perspectives

Helicobacter pylori infects about half of the world's population and is classified as a group 1 carcinogen, yet routine diagnosis still depends on methods that are invasive, instrument-heavy or insensitive at low bacterial burden. Nucleic-acid aptamers—short single-stranded DNA or RNA oligonucleotides isolated by SELEX—are chemically synthesised, thermally robust and programmable recognition elements for H. pylori biosensors, whereas sequence-complementary oligonucleotide probes detect bacterial genomic and ribosomal nucleic acids (genosensors). This review synthesises the 2019–2026 literature on both classes and keeps them explicitly separate. We examine whole-bacterium and recombinant-protein SELEX together with post-SELEX truncation and spacer engineering; the validated target spectrum, from whole cells and surface antigens to CagA, Hsp60, BabA and HpaA; electrochemical, optical, mass-sensitive and microfluidic transduction; and nucleic-acid circuitry, nanozyme and nanomaterial amplification. Six comparative tables summarise targets, platform performance, nanomaterial roles, amplification schemes, point-of-care formats and remaining barriers. Reported limits of detection reach 1 CFU mL⁻¹ for whole cells, 0.017 ng mL⁻¹ to 0.429 nM for proteins and 0.32 fM to 0.098 µM for nucleic acids, with preliminary clinical agreement against the ¹³C-urea breath test and PCR. Interface stability, standardisation, multiplexing, extension of protein-SELEX to VacA and urease, and multi-centre validation remain the main obstacles to routine deployment.

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Publication Details

Journal
Preprints.org
Published
2026-10-26
DOI
https://doi.org/10.20944/preprints202610.2529.v1
Primary Topic
Advanced biosensing and bioanalysis techniques
Type
preprint
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preprint

Nucleic Acid Aptamer-Based and Oligonucleotide Hybridization Biosensors for the Detection of Helicobacter pylori: Recent Advances, Transduction Mechanisms and Point-of-Care Perspectives

程宏献, Yunwang Zhao, Xiongxiong Lu, Shiyi Zhou et al.
Preprints.org
Advanced biosensing and bioanalysis techniques
preprint

Nucleic Acid Aptamer-Based and Oligonucleotide Hybridization Biosensors for the Detection of Helicobacter pylori: Recent Advances, Transduction Mechanisms and Point-of-Care Perspectives

程宏献, Yunwang Zhao, Xiongxiong Lu, Shiyi Zhou, Lei He
preprint en

Abstract

Helicobacter pylori infects about half of the world's population and is classified as a group 1 carcinogen, yet routine diagnosis still depends on methods that are invasive, instrument-heavy or insensitive at low bacterial burden. Nucleic-acid aptamers—short single-stranded DNA or RNA oligonucleotides isolated by SELEX—are chemically synthesised, thermally robust and programmable recognition elements for H. pylori biosensors, whereas sequence-complementary oligonucleotide probes detect bacterial genomic and ribosomal nucleic acids (genosensors). This review synthesises the 2019–2026 literature on both classes and keeps them explicitly separate. We examine whole-bacterium and recombinant-protein SELEX together with post-SELEX truncation and spacer engineering; the validated target spectrum, from whole cells and surface antigens to CagA, Hsp60, BabA and HpaA; electrochemical, optical, mass-sensitive and microfluidic transduction; and nucleic-acid circuitry, nanozyme and nanomaterial amplification. Six comparative tables summarise targets, platform performance, nanomaterial roles, amplification schemes, point-of-care formats and remaining barriers. Reported limits of detection reach 1 CFU mL⁻¹ for whole cells, 0.017 ng mL⁻¹ to 0.429 nM for proteins and 0.32 fM to 0.098 µM for nucleic acids, with preliminary clinical agreement against the ¹³C-urea breath test and PCR. Interface stability, standardisation, multiplexing, extension of protein-SELEX to VacA and urease, and multi-centre validation remain the main obstacles to routine deployment.

Preprints.org
Advanced biosensing and bioanalysis techniques
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Nucleic Acid Aptamer-Based and Oligonucleotide Hybridization Biosensors for the Detection of Helicobacter pylori: Recent Advances, Transduction Mechanisms and Point-of-Care Perspectives — 程宏献, Yunwang Zhao, et al. · Preprints.org (2026) | TGRS Research Map | TGRS