Does Tumor-Mask Guidance Improve Glioma Grade Classification from T2-Weighted MRI Alone? An Out-of-Fold Evaluation with nnU-Net and Ground-Truth Localization
Multi-sequence MRI is the standard for glioma assessment, but complete or contrast-enhanced protocols are not always available (withheld gadolinium, low-field MRI, incomplete archives). We asked whether tumor localization improves grade classification from T2-weighted MRI alone. In this retrospective study of the BraTS2020 training cohort (369 patients; legacy labels 293 high-grade [HGG], 76 low-grade [LGG]), 74 patients (15 LGG) were held out at the patient level for internal testing. A 2D U-Net trained in five development folds supplied out-of-fold whole-tumor masks for training 3D CNN classifiers; nnU-Net served as a segmentation benchmark. Classifiers received T2 alone or T2 plus a mask, which at test time came from the 2D U-Net, nnU-Net, the ground truth (oracle) or random noise. Analyses used five seeds, DeLong tests with Holm correction and development-set cross-validation. Whole-tumor Dice was 0.807 (95% CI 0.773–0.840) for the 2D U-Net and 0.877 (0.857–0.895) for nnU-Net. The T2-only CNN reached an ROC-AUC of 0.814 (95% CI 0.702–0.913). Mask-guided variants reached 0.677–0.742, none above T2-only (Holm-adjusted p = 1.00 for all four confirmatory comparisons of informative masks). Cross-validation reproduced this ranking (0.782 vs. 0.707). With LGG as the positive class, PR-AUC was 0.571 (no-skill 0.203). Tumor-mask guidance did not improve T2-only grading at any level of mask quality, including ground truth. The results concern a legacy grade label in one public cohort and require external testing.
Authors
- Atman Mukesh Desai (ORCID: https://orcid.org/0000-0001-8387-3808)
- Laura Marie Prolo (ORCID: https://orcid.org/0000-0001-7737-8675)
- Vivek Sanker (ORCID: https://orcid.org/0000-0003-0615-8397)
- D Wang (ORCID: https://orcid.org/0009-0008-7040-703X)
- Philip Heesen (ORCID: https://orcid.org/0000-0002-5090-4935)
- John Kevin Ratliff (ORCID: https://orcid.org/0000-0003-3452-1907)
- Harminder Singh (ORCID: https://orcid.org/0000-0001-8985-4018)
- María José Cavagnaro (ORCID: https://orcid.org/0000-0003-4846-9257)
- Zhikai Li (ORCID: https://orcid.org/0009-0000-5137-1934)
- Alexander Thaller (ORCID: https://orcid.org/0009-0000-9171-804X)
- Dhanya Mahesh
- Ravi Teja Medikonda (ORCID: https://orcid.org/0009-0002-4475-910X)
- Linda Liverani (ORCID: https://orcid.org/0000-0002-5210-3357)
- Michael Lim
Institutions
- Dartmouth College (US)
- University of Oslo (NO)
- Medical University of Graz (AT)
- University of Zurich (CH)
- Santa Clara Valley Medical Center (US)
- Stanford Medicine (US)
- Addenbrooke's Hospital (GB)
- Stanford University (US)
Publication Details
- Journal
- Journal of Imaging
- Published
- 2026-10-26
- DOI
- https://doi.org/10.3390/jimaging12110533
- Primary Topic
- Brain Tumor Detection and Classification
- Type
- article
- Field-Weighted Citation Impact
- 0.00