Interactive Stratigraphic Forward Simulation: An Open-Source Toolkit for Marine Geoscience Education

Forward stratigraphic modeling computes the stratigraphic response of sedimentary basins to sea-level change, tectonic subsidence, and sediment supply, and interactive simulation brings this capability into the sequence stratigraphy classroom, where connecting dynamic forcing to static architectures—progradation, retrogradation, and aggradation—is a persistently documented learning difficulty. Existing software, however, is polarized between costly commercial packages and research-grade open-source codes that demand substantial programming skills. This paper presents Sedapp-Py, a complete pure-Python 3.11 port of the open-source, R-based Sedapp nonlinear diffusion forward stratigraphic model, together with the Sedapp Teaching Studio, an interactive graphical teaching environment built around the engine. The port preserves the original model’s dual-lithology sand–mud transport, negative-feedback sediment-supply regulation, differential deposition–erosion efficiency, Athy-law compaction, and isostatic adjustment while removing the R dependency; the engine is fully deterministic and completes the 400 Ma reference simulation on the order of seconds, enabling real-time classroom experimentation. Comparison with the published reference case reproduces the backstripped template basin with a maximum fill thickness of 1452 m versus 1486 m (≈2.3% deviation), a fill-thickness RMSE of 119.5 m, and a depocenter offset of 450 m against the backstripped template (a consistency check, since the template and the subsidence input share provenance). A publication-quality didactic figure system—three-attribute cross-sections, Wheeler diagrams, shoreline trajectories, synthetic well logs, and supply-by-transport sensitivity matrices—is generated by a single reproducible script (fixed seed 42). Three documented teaching scenarios—a marine ramp under a sinusoidal eustatic cycle, a stacking-pattern laboratory, and a petroliferous basin case—demonstrate how slider-driven parameter manipulation makes the accommodation–stacking-pattern linkage directly observable. Sedapp-Py is, to the authors’ knowledge, the only actively maintained, open-source, GUI-equipped tool of its kind in the modern Python ecosystem, and it provides a reproducible foundation for classroom deployment and future learning-efficacy studies.

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Publication Details

Journal
Applied Sciences
Published
2026-10-27
DOI
https://doi.org/10.3390/app162110608
Primary Topic
Geological formations and processes
Type
article
Field-Weighted Citation Impact
0.00

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article

Interactive Stratigraphic Forward Simulation: An Open-Source Toolkit for Marine Geoscience Education

李景哲, Shi Qiu, Yunuo Liu, Yang Dai
Applied Sciences
Geological formations and processes
article

Interactive Stratigraphic Forward Simulation: An Open-Source Toolkit for Marine Geoscience Education

李景哲, Shi Qiu, Yunuo Liu, Yang Dai
article en

Abstract

Forward stratigraphic modeling computes the stratigraphic response of sedimentary basins to sea-level change, tectonic subsidence, and sediment supply, and interactive simulation brings this capability into the sequence stratigraphy classroom, where connecting dynamic forcing to static architectures—progradation, retrogradation, and aggradation—is a persistently documented learning difficulty. Existing software, however, is polarized between costly commercial packages and research-grade open-source codes that demand substantial programming skills. This paper presents Sedapp-Py, a complete pure-Python 3.11 port of the open-source, R-based Sedapp nonlinear diffusion forward stratigraphic model, together with the Sedapp Teaching Studio, an interactive graphical teaching environment built around the engine. The port preserves the original model’s dual-lithology sand–mud transport, negative-feedback sediment-supply regulation, differential deposition–erosion efficiency, Athy-law compaction, and isostatic adjustment while removing the R dependency; the engine is fully deterministic and completes the 400 Ma reference simulation on the order of seconds, enabling real-time classroom experimentation. Comparison with the published reference case reproduces the backstripped template basin with a maximum fill thickness of 1452 m versus 1486 m (≈2.3% deviation), a fill-thickness RMSE of 119.5 m, and a depocenter offset of 450 m against the backstripped template (a consistency check, since the template and the subsidence input share provenance). A publication-quality didactic figure system—three-attribute cross-sections, Wheeler diagrams, shoreline trajectories, synthetic well logs, and supply-by-transport sensitivity matrices—is generated by a single reproducible script (fixed seed 42). Three documented teaching scenarios—a marine ramp under a sinusoidal eustatic cycle, a stacking-pattern laboratory, and a petroliferous basin case—demonstrate how slider-driven parameter manipulation makes the accommodation–stacking-pattern linkage directly observable. Sedapp-Py is, to the authors’ knowledge, the only actively maintained, open-source, GUI-equipped tool of its kind in the modern Python ecosystem, and it provides a reproducible foundation for classroom deployment and future learning-efficacy studies.

Applied SciencesVol. 16(21)
Qingdao University of Science and Technology (CN), Qingdao Huanghai University (CN)
National Natural Science Foundation of China, Natural Science Foundation of Shandong Province
Quality education
Openalex Percentile: Top 17%
Geological formations and processes
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