MedVTok: A General-Purpose Medical Visual Tokenizer

Multimodal medical AI requires a common visual interface for encoding heterogeneous imaging evidence for patient condition modeling. However, existing medical visual tokenizers are often tied to a specific dimension and imaging modality, forcing multimodal systems to rely on fragmented and poorly reusable representations. We introduce MedVTok, a general-purpose visual tokenizer that maps 2D images and 3D volumes from diverse imaging modalities into a unified token space. Building such a tokenizer poses two key challenges: preserving anatomical structure across dimensions and capturing clinical semantics across modalities. To this end, MedVTok introduces (i) slice differential regularization, which explicitly models inter-slice anatomical coherence missing in previous per-pixel/per-voxel supervision, and (ii) multi-expert representation alignment, which integrates knowledge from multiple medical expert encoders while retaining modality-specific complementary knowledge. Trained on 28M images and 70K volumes across 9 imaging modalities, MedVTok supports classification, retrieval, segmentation, synthesis, visual question answering, and medical report generation through a single tokenizer. Across 24 benchmarks, MedVTok achieves state-of-the-art performance, demonstrating a scalable token interface that unifies medical image dimension, modality, and task usage.

Authors

Publication Details

Journal
arXiv (Cornell University)
Published
2026-10-26
DOI
https://doi.org/10.48550/arxiv.2610.35842
Primary Topic
Multimodal Machine Learning Applications
Type
preprint
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preprint

MedVTok: A General-Purpose Medical Visual Tokenizer

Zongyuan Ge, Diping Song, Hongming Shan, Junzhi Ning et al.
arXiv (Cornell University)
Multimodal Machine Learning Applications
preprint

MedVTok: A General-Purpose Medical Visual Tokenizer

Zongyuan Ge, Diping Song, Hongming Shan, Junzhi Ning, Shaohao Rui, Yuanfeng Ji, Wenhao Tang, Cheng Tang, Wei Li, Zilong Li, Jiyao Liu, Wenjie Li, Ying Chen, Chenglong Ma, Ming Hu, Shujian Gao, Jin Ye, Junjun He, Yujie Wei, Yujie Zhang, Chaoyang Zhang
preprint en

Abstract

Multimodal medical AI requires a common visual interface for encoding heterogeneous imaging evidence for patient condition modeling. However, existing medical visual tokenizers are often tied to a specific dimension and imaging modality, forcing multimodal systems to rely on fragmented and poorly reusable representations. We introduce MedVTok, a general-purpose visual tokenizer that maps 2D images and 3D volumes from diverse imaging modalities into a unified token space. Building such a tokenizer poses two key challenges: preserving anatomical structure across dimensions and capturing clinical semantics across modalities. To this end, MedVTok introduces (i) slice differential regularization, which explicitly models inter-slice anatomical coherence missing in previous per-pixel/per-voxel supervision, and (ii) multi-expert representation alignment, which integrates knowledge from multiple medical expert encoders while retaining modality-specific complementary knowledge. Trained on 28M images and 70K volumes across 9 imaging modalities, MedVTok supports classification, retrieval, segmentation, synthesis, visual question answering, and medical report generation through a single tokenizer. Across 24 benchmarks, MedVTok achieves state-of-the-art performance, demonstrating a scalable token interface that unifies medical image dimension, modality, and task usage.

arXiv (Cornell University)
Multimodal Machine Learning Applications
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MedVTok: A General-Purpose Medical Visual Tokenizer — Zongyuan Ge, Diping Song, et al. · arXiv (Cornell University) (2026) | TGRS Research Map | TGRS