A Heterometallic Cu–Na Phthalate Two-Dimensional Coordination Polymer: Crystal Structure, Hirshfeld Surface Analysis and Molecular Docking Insights

A new copper-sodium heterometallic phthalate coordination polymer, namely catena-(bis(µu5-o-Phthalato-O,O')-diaqua-copper(II)-di-sodium(I)) (NaCu-Phth), was synthesized and its structure was investigated by single-crystal X-ray diffraction. The phthalate dianion acts as a multidentate bridge linker connecting Cu(II) and Na(I) centers along the b and c crystallographic axes, forming an extended two-dimensional coordination network. The Hirshfeld surface and fingerprint analysis revealed that the crystal packing environment is dominated by H O (23.1%), H C (19.3%), O Na (16.3%), and O Cu (10.2%) contacts. In comparison, H H contacts (21.6%) are regarded as non-directional dispersive contributions. Void analysis revealed a dense nonporous structure with a void volume of 7.6% of the unit-cell volume. Molecular docking studies against 3RUK, 4ZXT and 4ZVM showed binding affinities of -3.95, -4.60 and -6.62 kcal mol-1, with the highest computed interaction observed for 4ZVM. These results confirm the structural and supramolecular properties of the Cu-Na phthalate framework and provide the first in silico data on its receptor-binding activity.

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Publication Details

Journal
Журнал структурной химии
Published
2026-10-26
DOI
https://doi.org/10.26902/jsc_id180958
Primary Topic
Crystal structures of chemical compounds
Type
article
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article

A Heterometallic Cu–Na Phthalate Two-Dimensional Coordination Polymer: Crystal Structure, Hirshfeld Surface Analysis and Molecular Docking Insights

G. M. Aliyeva, Sh.R. Mamedova, E. M. Mövsümov, H.F. Mammadova et al.
Журнал структурной химии
Crystal structures of chemical compounds
article

A Heterometallic Cu–Na Phthalate Two-Dimensional Coordination Polymer: Crystal Structure, Hirshfeld Surface Analysis and Molecular Docking Insights

G. M. Aliyeva, Sh.R. Mamedova, E. M. Mövsümov, H.F. Mammadova, S. Y. Rahmanova, O. Şahin, M. Behzad, L. Ghasemi, M.N. Tahir, M. Ashfaq
article en

Abstract

A new copper-sodium heterometallic phthalate coordination polymer, namely catena-(bis(µu5-o-Phthalato-O,O')-diaqua-copper(II)-di-sodium(I)) (NaCu-Phth), was synthesized and its structure was investigated by single-crystal X-ray diffraction. The phthalate dianion acts as a multidentate bridge linker connecting Cu(II) and Na(I) centers along the b and c crystallographic axes, forming an extended two-dimensional coordination network. The Hirshfeld surface and fingerprint analysis revealed that the crystal packing environment is dominated by H O (23.1%), H C (19.3%), O Na (16.3%), and O Cu (10.2%) contacts. In comparison, H H contacts (21.6%) are regarded as non-directional dispersive contributions. Void analysis revealed a dense nonporous structure with a void volume of 7.6% of the unit-cell volume. Molecular docking studies against 3RUK, 4ZXT and 4ZVM showed binding affinities of -3.95, -4.60 and -6.62 kcal mol-1, with the highest computed interaction observed for 4ZVM. These results confirm the structural and supramolecular properties of the Cu-Na phthalate framework and provide the first in silico data on its receptor-binding activity.

Журнал структурной химииVol. 68(3)
Openalex Percentile: Top 28%
Crystal structures of chemical compounds
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