The Biological Compute Capture

This monograph addresses the molecular enclosure of DNA data storage, enzymatic gatekeeping, and the synthetic genetic rent engine. It establishes that the shift from silicon to biological macromolecular substrate is not a neutral density upgrade but a structural conversion of static digital memory into continuous biochemical rent dependencies. The work systematically examines: the physics and thermodynamics of macromolecular storage, including volumetric density limits, Fick's-law diffusion dynamics governing retrieval latency, and depurination rates at ambient temperature; the structural mechanics of the enzymatic rent engine across the write pipeline (phosphoramidite and terminal deoxynucleotidyl transferase synthesis under consolidated bio-monopoly patent control) and the read pipeline (high-throughput and nanopore sequencing dependent on degradable flow cells, proprietary fluorophores, and reagent licensing); and a formal cost model in which C_bio(t) = K_syn(B) + Σ[C_pcr + C_seq(B) + C_lic] + ∫[S_buffer(τ) + R_refresh(τ)]dτ grows unbounded against C_silicon(t), producing asymptotic cost inversion. Sovereign and tactical implications follow: loss of air-gapped autonomy, selective epistemological scrubbing at the chemical layer, and biological lock-in once silicon arrays are decommissioned. The monograph contributes to science and technology studies, critical infrastructure studies, and the political economy of computation.

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-10-26
DOI
https://doi.org/10.5281/zenodo.23671312
Primary Topic
DNA and Biological Computing
Type
article
Field-Weighted Citation Impact
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The Biological Compute Capture

Kanna Amresh
Zenodo (CERN European Organization for Nuclear Research)
DNA and Biological Computing
article

The Biological Compute Capture

Kanna Amresh
article en

Abstract

This monograph addresses the molecular enclosure of DNA data storage, enzymatic gatekeeping, and the synthetic genetic rent engine. It establishes that the shift from silicon to biological macromolecular substrate is not a neutral density upgrade but a structural conversion of static digital memory into continuous biochemical rent dependencies. The work systematically examines: the physics and thermodynamics of macromolecular storage, including volumetric density limits, Fick's-law diffusion dynamics governing retrieval latency, and depurination rates at ambient temperature; the structural mechanics of the enzymatic rent engine across the write pipeline (phosphoramidite and terminal deoxynucleotidyl transferase synthesis under consolidated bio-monopoly patent control) and the read pipeline (high-throughput and nanopore sequencing dependent on degradable flow cells, proprietary fluorophores, and reagent licensing); and a formal cost model in which C_bio(t) = K_syn(B) + Σ[C_pcr + C_seq(B) + C_lic] + ∫[S_buffer(τ) + R_refresh(τ)]dτ grows unbounded against C_silicon(t), producing asymptotic cost inversion. Sovereign and tactical implications follow: loss of air-gapped autonomy, selective epistemological scrubbing at the chemical layer, and biological lock-in once silicon arrays are decommissioned. The monograph contributes to science and technology studies, critical infrastructure studies, and the political economy of computation.

Zenodo (CERN European Organization for Nuclear Research)
Openalex Percentile: Top 22%
DNA and Biological Computing
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The Biological Compute Capture — Kanna Amresh · Zenodo (CERN European Organization for Nuclear Research) (2026) | TGRS Research Map | TGRS