Navigating the BERMUDA triangle of scientific software: A modular approach to data, hardware, and algorithm design in quantum chemistry and its realization in Python

Modern quantum-chemistry software must support increasingly complex methods, heterogeneous hardware, reusable data structures, and user-facing workflows without losing maintainability. Using PyBEST as a case study, this work discusses how such complexity can be organized within the Python programming language through modular interfaces rather than scattered across method-specific implementations. The central motif is the Balanced pythonic Environment for Research with Modular Unified Design and Abstractions (BERMUDA) Triangle: data representation, computational execution, and algorithmic organization, showcasing how implemented components and ongoing architectural developments-including backend-independent tensor contractions, an effective-Hamiltonian infrastructure, a domain-aware linear-algebra layer, the DAISpY charge-transfer analysis, and graphical input preparation-can be organized within one coherent ecosystem. The resulting perspective treats scalability not only as a numerical goal, but also as a software-design property: scientific codes remain sustainable when new features can be added without obscuring the route from theory to implementation and interpretation.

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Publication Details

Journal
The Journal of Chemical Physics
Published
2026-10-26
DOI
https://doi.org/10.1063/5.0350345
Primary Topic
Advanced Chemical Physics Studies
Type
article
Field-Weighted Citation Impact
0.00

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article

Navigating the BERMUDA triangle of scientific software: A modular approach to data, hardware, and algorithm design in quantum chemistry and its realization in Python

Julian Świerczyński, Katharina Bogusławski, Paweł Tecmer, Emil Sujkowski et al.
The Journal of Chemical Physics
Advanced Chemical Physics Studies
article

Navigating the BERMUDA triangle of scientific software: A modular approach to data, hardware, and algorithm design in quantum chemistry and its realization in Python

Julian Świerczyński, Katharina Bogusławski, Paweł Tecmer, Emil Sujkowski, Julia Szczuczko, Antonina Dobrowolska
article en

Abstract

Modern quantum-chemistry software must support increasingly complex methods, heterogeneous hardware, reusable data structures, and user-facing workflows without losing maintainability. Using PyBEST as a case study, this work discusses how such complexity can be organized within the Python programming language through modular interfaces rather than scattered across method-specific implementations. The central motif is the Balanced pythonic Environment for Research with Modular Unified Design and Abstractions (BERMUDA) Triangle: data representation, computational execution, and algorithmic organization, showcasing how implemented components and ongoing architectural developments-including backend-independent tensor contractions, an effective-Hamiltonian infrastructure, a domain-aware linear-algebra layer, the DAISpY charge-transfer analysis, and graphical input preparation-can be organized within one coherent ecosystem. The resulting perspective treats scalability not only as a numerical goal, but also as a software-design property: scientific codes remain sustainable when new features can be added without obscuring the route from theory to implementation and interpretation.

The Journal of Chemical PhysicsVol. 165(16)
Nicolaus Copernicus University (PL), Institute of Physics (AZ)
Narodowe Centrum Nauki, HORIZON EUROPE European Research Council
Openalex Percentile: Top 20%
Advanced Chemical Physics Studies
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