The Demiurge Framework: Emergent Multicellular Predation and Morphogenesis from Mesoscale Prebiotic Thermodynamics

A persistent bottleneck in origin-of-life computational biology is the "Mesoscale Explanatory Gap": ab initio quantum chemistry and all-atom molecular dynamics are computationally confined to femtosecond scales ($\sim 10^{-12}$ s) and tens of angstroms, while traditional artificial life models rely on non-physical heuristics (e.g., boids, kinematic automata) devoid of mass conservation and thermodynamic dissipation. Here, we present **The Demiurge Framework**, a mesoscale, first-principles computational platform demonstrating the spontaneous, unscripted transition from an open, non-equilibrium CHONPS (Carbon, Hydrogen, Oxygen, Nitrogen, Phosphorus, Sulfur, with Fe, Si, and Ti catalysts) thermal-gradient environment to predatory, multicellular proto-bilaterians. Beyond terrestrial biochemistry, the platform provides an **Extensible Universal Stoichiometric Engine**, enabling arbitrary user-defined chemical elements (hypothetical, synthetic, and non-terrestrial) and planetary-scale geochemical regimes (Titan cryo-hydrocarbons, Europa subglacial brine, Venusian supercritical fluid, and Chondritic baths). The framework integrates:1. An analytical kinematic hydrothermal convection field governed by Speer-Rona plume dynamics and Rayleigh-Bénard downwelling;2. An open chemical registry supporting arbitrary elemental valences $V$, electronegativities $\chi$, and Pauling-Arrhenius bond kinetics;3. Vesicular compartmentalization driven by Tanford-Israelachvili critical micelle concentration (CMC) and evaluated via Tibor Gánti’s Chemoton closure criterion;4. Spontaneous gastrulation governed by René Thom’s cusp catastrophe ($4u^3 + 27v^2 \le 0$);5. Neuromotor coordination driven by Piezo-type mechanotransduction, electrotonic gap junctions, and spike-timing-dependent plasticity (STDP);6. Phagotrophic predation governed by Michaelis-Menten vacuolar lysis and Lindeman trophic efficiency. To establish a reproducible metric for open-ended evolution, we introduce the **Prebiotic Complexity Benchmark (PCB-18: Phase I Reference Trajectory)** — an 18-milestone verification suite tracking macroscopic phase transitions from inorganic dimers to cognitive bilaterian predation, serving as the benchmark foundation for Phase II macro-ecological diversification. Operating as a data-oriented, zero-garbage-collection Go engine at 60 FPS on standard consumer hardware, the architecture decouples immutable thermodynamic substrate physics from an exploratory, agentic "Demiurge" layer operating via the Model Context Protocol (MCP).

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-10-24
DOI
https://doi.org/10.5281/zenodo.23606771
Primary Topic
Origins and Evolution of Life
Type
preprint
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preprint

The Demiurge Framework: Emergent Multicellular Predation and Morphogenesis from Mesoscale Prebiotic Thermodynamics

Yuriy Scherbanovskiy
Zenodo (CERN European Organization for Nuclear Research)
Origins and Evolution of Life
preprint

The Demiurge Framework: Emergent Multicellular Predation and Morphogenesis from Mesoscale Prebiotic Thermodynamics

Yuriy Scherbanovskiy
preprint en

Abstract

A persistent bottleneck in origin-of-life computational biology is the "Mesoscale Explanatory Gap": ab initio quantum chemistry and all-atom molecular dynamics are computationally confined to femtosecond scales ($\sim 10^{-12}$ s) and tens of angstroms, while traditional artificial life models rely on non-physical heuristics (e.g., boids, kinematic automata) devoid of mass conservation and thermodynamic dissipation. Here, we present **The Demiurge Framework**, a mesoscale, first-principles computational platform demonstrating the spontaneous, unscripted transition from an open, non-equilibrium CHONPS (Carbon, Hydrogen, Oxygen, Nitrogen, Phosphorus, Sulfur, with Fe, Si, and Ti catalysts) thermal-gradient environment to predatory, multicellular proto-bilaterians. Beyond terrestrial biochemistry, the platform provides an **Extensible Universal Stoichiometric Engine**, enabling arbitrary user-defined chemical elements (hypothetical, synthetic, and non-terrestrial) and planetary-scale geochemical regimes (Titan cryo-hydrocarbons, Europa subglacial brine, Venusian supercritical fluid, and Chondritic baths). The framework integrates:1. An analytical kinematic hydrothermal convection field governed by Speer-Rona plume dynamics and Rayleigh-Bénard downwelling;2. An open chemical registry supporting arbitrary elemental valences $V$, electronegativities $\chi$, and Pauling-Arrhenius bond kinetics;3. Vesicular compartmentalization driven by Tanford-Israelachvili critical micelle concentration (CMC) and evaluated via Tibor Gánti’s Chemoton closure criterion;4. Spontaneous gastrulation governed by René Thom’s cusp catastrophe ($4u^3 + 27v^2 \le 0$);5. Neuromotor coordination driven by Piezo-type mechanotransduction, electrotonic gap junctions, and spike-timing-dependent plasticity (STDP);6. Phagotrophic predation governed by Michaelis-Menten vacuolar lysis and Lindeman trophic efficiency. To establish a reproducible metric for open-ended evolution, we introduce the **Prebiotic Complexity Benchmark (PCB-18: Phase I Reference Trajectory)** — an 18-milestone verification suite tracking macroscopic phase transitions from inorganic dimers to cognitive bilaterian predation, serving as the benchmark foundation for Phase II macro-ecological diversification. Operating as a data-oriented, zero-garbage-collection Go engine at 60 FPS on standard consumer hardware, the architecture decouples immutable thermodynamic substrate physics from an exploratory, agentic "Demiurge" layer operating via the Model Context Protocol (MCP).

Zenodo (CERN European Organization for Nuclear Research)
Origins and Evolution of Life
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