Unconstrained detection of productive autocatalytic cores is NP-complete

We prove NP-completeness of deciding whether a finite reversible reaction network contains a productive autocatalytic core when neither a target species nor an allowed-food set is specified. The input is a binary encoding of literal nonnegative integer reactant and product matrices, with a signed real flow on each reaction identity. A nonsingular square-witness characterization gives polynomial certificates. A weighted incidence construction reduces prescribed two-path directed linkage to unrestricted core detection, and an explicit constant-size switch construction reduces SAT to the linkage instances. Actual machine-level NP membership and a total polynomial-time binary transducer complete the classification. The terminal theorem is verified in Lean 4. The result concerns structural possibility in this source model and imposes no elementary reaction arity or conservation constraint.

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-10-19
DOI
https://doi.org/10.5281/zenodo.23476932
Primary Topic
DNA and Biological Computing
Type
preprint
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
preprint

Unconstrained detection of productive autocatalytic cores is NP-complete

Michael Mislan
Zenodo (CERN European Organization for Nuclear Research)
DNA and Biological Computing
preprint

Unconstrained detection of productive autocatalytic cores is NP-complete

Michael Mislan
preprint en

Abstract

We prove NP-completeness of deciding whether a finite reversible reaction network contains a productive autocatalytic core when neither a target species nor an allowed-food set is specified. The input is a binary encoding of literal nonnegative integer reactant and product matrices, with a signed real flow on each reaction identity. A nonsingular square-witness characterization gives polynomial certificates. A weighted incidence construction reduces prescribed two-path directed linkage to unrestricted core detection, and an explicit constant-size switch construction reduces SAT to the linkage instances. Actual machine-level NP membership and a total polynomial-time binary transducer complete the classification. The terminal theorem is verified in Lean 4. The result concerns structural possibility in this source model and imposes no elementary reaction arity or conservation constraint.

Zenodo (CERN European Organization for Nuclear Research)
DNA and Biological Computing
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.