Exact interfaces for modular autocatalytic networks
We study which information about an autocatalytic reaction network suffices for exact composition with other modules. For the maximum amplification factor, threshold-indexed species-price cones compose by exact set operations, while scalar optima do not. Autocatalytic child-selection cores are reconstructed from complete, uniquely matched ordinary-core anchors using alternating exchange paths and certified rational semipositivity tests. For irreducible unary diluted source networks, positive-composition certificates characterize growth, criticality and extinction under arbitrary species degradation; a related certificate identifies partial-actuation stabilizability. Further manuscript results treat factor interactions, exact boundary traces, contextual indistinguishability and junction-tree composition under running intersection and scope extensionality. Separator width bounds message arity, without a runtime claim. Eleven foundation statements are Palomar registered in Lean 4; the broader historical formalization and conventional extensions retain their separately documented scope. Thermodynamic and passive-tail examples illustrate exact interfaces and information loss. Structural amplification and linear onset conclusions are distinguished from nonlinear kinetic dynamics.
Authors
- Michael Mislan
Publication Details
- Journal
- Zenodo (CERN European Organization for Nuclear Research)
- Published
- 2026-10-18
- DOI
- https://doi.org/10.5281/zenodo.23459492
- Primary Topic
- DNA and Biological Computing
- Type
- preprint