Exact interfaces for modular autocatalytic networks

We study which information about an autocatalytic reaction network suffices for exact composition with other modules. For the maximum amplification factor, threshold-indexed species-price cones compose by exact set operations, while scalar optima do not. Autocatalytic child-selection cores are reconstructed from complete, uniquely matched ordinary-core anchors using alternating exchange paths and certified rational semipositivity tests. For irreducible unary diluted source networks, positive-composition certificates characterize growth, criticality and extinction under arbitrary species degradation; a related certificate identifies partial-actuation stabilizability. Further manuscript results treat factor interactions, exact boundary traces, contextual indistinguishability and junction-tree composition under running intersection and scope extensionality. Separator width bounds message arity, without a runtime claim. Eleven foundation statements are Palomar registered in Lean 4; the broader historical formalization and conventional extensions retain their separately documented scope. Thermodynamic and passive-tail examples illustrate exact interfaces and information loss. Structural amplification and linear onset conclusions are distinguished from nonlinear kinetic dynamics.

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-10-18
DOI
https://doi.org/10.5281/zenodo.23459492
Primary Topic
DNA and Biological Computing
Type
preprint
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
preprint

Exact interfaces for modular autocatalytic networks

Michael Mislan
Zenodo (CERN European Organization for Nuclear Research)
DNA and Biological Computing
preprint

Exact interfaces for modular autocatalytic networks

Michael Mislan
preprint en

Abstract

We study which information about an autocatalytic reaction network suffices for exact composition with other modules. For the maximum amplification factor, threshold-indexed species-price cones compose by exact set operations, while scalar optima do not. Autocatalytic child-selection cores are reconstructed from complete, uniquely matched ordinary-core anchors using alternating exchange paths and certified rational semipositivity tests. For irreducible unary diluted source networks, positive-composition certificates characterize growth, criticality and extinction under arbitrary species degradation; a related certificate identifies partial-actuation stabilizability. Further manuscript results treat factor interactions, exact boundary traces, contextual indistinguishability and junction-tree composition under running intersection and scope extensionality. Separator width bounds message arity, without a runtime claim. Eleven foundation statements are Palomar registered in Lean 4; the broader historical formalization and conventional extensions retain their separately documented scope. Thermodynamic and passive-tail examples illustrate exact interfaces and information loss. Structural amplification and linear onset conclusions are distinguished from nonlinear kinetic dynamics.

Zenodo (CERN European Organization for Nuclear Research)
DNA and Biological Computing
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Exact interfaces for modular autocatalytic networks — Michael Mislan · Zenodo (CERN European Organization for Nuclear Research) (2026) | TGRS Research Map | TGRS