Fully Automated Brain Tumor Volume Estimation via Multiparametric MRI and Constrained Deep Convolutional Networks

Abstract. Prompt and precise volumetric assessment of malignant brain tumors via magnetic resonance imaging (MRI) remains a cornerstone for effective neurosurgical planning. This study introduces a computationally streamlined, cost-effective paradigm leveraging a tailored deep convolutional neural network topology optimized for semantic tumor segmentation and physical volume quantification. Utilizing the multi-institution BraTS cohort encompassing exactly 369 patient scans, we synthesized three imaging sequences—contrast-enhanced T1-weighted (T1ce), T2, and FLAIR—into a unified multi-parametric three-channel tensor representation. To ensure clinical accessibility, the network was optimized across 15 epochs (825 iterations) to operate exclusively under a central processing unit (CPU) architecture (requiring 236 minutes of training time and zero GPU dependency), bypassing resource-heavy hardware infrastructures. Comparative validation demonstrates that standard single-channel slice processing exhibits catastrophic localization failure, whereas the proposed multi-parametric framework achieves a robust validation accuracy of 89.72%. Furthermore, by integrating a dedicated Equation of Calibration and Volumetric Integration (ECIV) within a proprietary graphical application, "Final Tumor Pro v3," pixel-level classification probabilities are directly mapped to physical volume (mm3). The model’s performance scales progressively from a stable Dice score of 68.39% within highly ambiguous, low-contrast boundary topologies to a peak efficiency of 95.60% across core tumor slices, validating its profound resilience and clinical utility under stringent hardware constraints.

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-10-16
DOI
https://doi.org/10.5281/zenodo.23422347
Primary Topic
Brain Tumor Detection and Classification
Type
preprint
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preprint

Fully Automated Brain Tumor Volume Estimation via Multiparametric MRI and Constrained Deep Convolutional Networks

Alireza Azadifar
Zenodo (CERN European Organization for Nuclear Research)
Brain Tumor Detection and Classification
preprint

Fully Automated Brain Tumor Volume Estimation via Multiparametric MRI and Constrained Deep Convolutional Networks

Alireza Azadifar
preprint en

Abstract

Abstract. Prompt and precise volumetric assessment of malignant brain tumors via magnetic resonance imaging (MRI) remains a cornerstone for effective neurosurgical planning. This study introduces a computationally streamlined, cost-effective paradigm leveraging a tailored deep convolutional neural network topology optimized for semantic tumor segmentation and physical volume quantification. Utilizing the multi-institution BraTS cohort encompassing exactly 369 patient scans, we synthesized three imaging sequences—contrast-enhanced T1-weighted (T1ce), T2, and FLAIR—into a unified multi-parametric three-channel tensor representation. To ensure clinical accessibility, the network was optimized across 15 epochs (825 iterations) to operate exclusively under a central processing unit (CPU) architecture (requiring 236 minutes of training time and zero GPU dependency), bypassing resource-heavy hardware infrastructures. Comparative validation demonstrates that standard single-channel slice processing exhibits catastrophic localization failure, whereas the proposed multi-parametric framework achieves a robust validation accuracy of 89.72%. Furthermore, by integrating a dedicated Equation of Calibration and Volumetric Integration (ECIV) within a proprietary graphical application, "Final Tumor Pro v3," pixel-level classification probabilities are directly mapped to physical volume (mm3). The model’s performance scales progressively from a stable Dice score of 68.39% within highly ambiguous, low-contrast boundary topologies to a peak efficiency of 95.60% across core tumor slices, validating its profound resilience and clinical utility under stringent hardware constraints.

Zenodo (CERN European Organization for Nuclear Research)
Good health and well-being
Brain Tumor Detection and Classification
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